Experiment: PBS_cage_1_mice _Feces_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgH and betA are separated by 212 nucleotides betA and betB are separated by 13 nucleotides
b0310: ykgH - predicted inner membrane protein (NCBI), at 323,920 to 324,588
ykgH
b0311: betA - choline dehydrogenase (NCBI), at 324,801 to 326,471
betA
b0312: betB - betaine aldehyde dehydrogenase, NAD-dependent (NCBI), at 326,485 to 327,957
betB
Position (kb) 324
325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 323.874 kb on + strand at 323.874 kb on + strand at 323.889 kb on + strand at 323.892 kb on - strand at 323.892 kb on - strand at 323.892 kb on - strand at 323.892 kb on - strand at 324.068 kb on - strand, within ykgH at 324.068 kb on - strand, within ykgH at 324.070 kb on - strand, within ykgH at 324.088 kb on - strand, within ykgH at 324.248 kb on - strand, within ykgH at 324.636 kb on - strand at 324.648 kb on - strand at 324.648 kb on - strand at 324.648 kb on - strand at 324.691 kb on - strand at 324.701 kb on - strand at 324.701 kb on - strand at 324.710 kb on - strand at 324.729 kb on - strand at 324.740 kb on - strand at 324.749 kb on - strand at 324.749 kb on - strand at 324.754 kb on - strand at 324.754 kb on - strand at 324.754 kb on - strand at 324.754 kb on - strand at 324.754 kb on - strand at 324.768 kb on - strand at 324.768 kb on - strand at 324.768 kb on - strand at 324.783 kb on - strand at 324.792 kb on - strand at 324.794 kb on - strand at 324.824 kb on - strand at 324.855 kb on - strand at 324.863 kb on - strand at 324.863 kb on - strand at 324.882 kb on - strand at 324.888 kb on - strand at 324.968 kb on - strand, within betA at 324.973 kb on - strand, within betA at 324.975 kb on - strand, within betA at 324.985 kb on - strand, within betA at 324.985 kb on - strand, within betA at 324.992 kb on - strand, within betA at 325.078 kb on + strand, within betA at 325.156 kb on - strand, within betA at 325.156 kb on - strand, within betA at 325.222 kb on + strand, within betA at 325.222 kb on + strand, within betA at 325.278 kb on - strand, within betA at 325.278 kb on - strand, within betA at 325.332 kb on - strand, within betA at 325.332 kb on - strand, within betA at 325.345 kb on - strand, within betA at 325.370 kb on - strand, within betA at 325.370 kb on - strand, within betA at 325.446 kb on - strand, within betA at 325.506 kb on + strand, within betA at 325.513 kb on - strand, within betA at 325.513 kb on - strand, within betA at 325.513 kb on - strand, within betA at 325.520 kb on + strand, within betA at 325.520 kb on + strand, within betA at 325.525 kb on + strand, within betA at 325.525 kb on - strand, within betA at 325.533 kb on - strand, within betA at 325.533 kb on - strand, within betA at 325.551 kb on - strand, within betA at 325.707 kb on - strand, within betA at 325.714 kb on + strand, within betA at 325.714 kb on + strand, within betA at 325.752 kb on - strand, within betA at 325.835 kb on - strand, within betA at 325.835 kb on - strand, within betA at 325.858 kb on + strand, within betA at 325.858 kb on + strand, within betA at 325.873 kb on + strand, within betA at 325.873 kb on + strand, within betA at 325.890 kb on - strand, within betA at 325.914 kb on - strand, within betA at 325.968 kb on - strand, within betA at 325.968 kb on - strand, within betA at 326.137 kb on - strand, within betA at 326.214 kb on + strand, within betA at 326.384 kb on - strand at 326.384 kb on - strand at 326.435 kb on - strand at 326.524 kb on - strand at 326.537 kb on + strand at 326.691 kb on - strand, within betB at 326.698 kb on + strand, within betB at 326.698 kb on + strand, within betB at 326.722 kb on - strand, within betB at 326.722 kb on - strand, within betB at 326.782 kb on - strand, within betB at 326.782 kb on - strand, within betB at 326.816 kb on - strand, within betB at 326.816 kb on - strand, within betB at 326.871 kb on - strand, within betB at 326.912 kb on - strand, within betB at 326.936 kb on + strand, within betB at 326.944 kb on - strand, within betB at 327.090 kb on + strand, within betB at 327.097 kb on + strand, within betB at 327.097 kb on + strand, within betB at 327.101 kb on - strand, within betB at 327.413 kb on - strand, within betB at 327.422 kb on - strand, within betB at 327.447 kb on + strand, within betB
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_1_mice _Feces_40 hr remove 323,874 + -1.0 323,874 + -0.4 323,889 + +1.4 323,892 - +2.4 323,892 - +0.8 323,892 - +2.4 323,892 - -0.9 324,068 - ykgH b0310 0.22 +0.8 324,068 - ykgH b0310 0.22 -0.4 324,070 - ykgH b0310 0.22 -1.5 324,088 - ykgH b0310 0.25 +1.4 324,248 - ykgH b0310 0.49 +2.4 324,636 - -3.5 324,648 - -1.0 324,648 - -0.9 324,648 - +0.7 324,691 - -2.3 324,701 - -1.6 324,701 - -2.6 324,710 - -2.4 324,729 - +1.0 324,740 - -0.4 324,749 - -2.8 324,749 - -3.3 324,754 - -1.8 324,754 - -0.8 324,754 - -3.1 324,754 - -3.4 324,754 - +0.6 324,768 - +1.6 324,768 - +1.8 324,768 - -2.1 324,783 - -2.5 324,792 - +0.3 324,794 - -0.4 324,824 - -0.0 324,855 - -0.1 324,863 - +1.0 324,863 - +2.8 324,882 - -0.7 324,888 - +0.2 324,968 - betA b0311 0.10 -0.7 324,973 - betA b0311 0.10 -1.3 324,975 - betA b0311 0.10 -0.5 324,985 - betA b0311 0.11 -3.6 324,985 - betA b0311 0.11 -1.7 324,992 - betA b0311 0.11 +0.1 325,078 + betA b0311 0.17 +1.5 325,156 - betA b0311 0.21 -2.7 325,156 - betA b0311 0.21 -2.6 325,222 + betA b0311 0.25 +0.9 325,222 + betA b0311 0.25 -0.9 325,278 - betA b0311 0.29 -0.5 325,278 - betA b0311 0.29 +0.6 325,332 - betA b0311 0.32 +1.9 325,332 - betA b0311 0.32 -0.3 325,345 - betA b0311 0.33 +0.3 325,370 - betA b0311 0.34 -1.9 325,370 - betA b0311 0.34 -0.4 325,446 - betA b0311 0.39 +1.4 325,506 + betA b0311 0.42 +2.3 325,513 - betA b0311 0.43 -0.2 325,513 - betA b0311 0.43 -1.8 325,513 - betA b0311 0.43 -2.1 325,520 + betA b0311 0.43 +0.1 325,520 + betA b0311 0.43 +1.5 325,525 + betA b0311 0.43 -0.1 325,525 - betA b0311 0.43 -0.9 325,533 - betA b0311 0.44 -1.3 325,533 - betA b0311 0.44 -1.3 325,551 - betA b0311 0.45 -1.4 325,707 - betA b0311 0.54 -0.7 325,714 + betA b0311 0.55 +1.1 325,714 + betA b0311 0.55 +0.2 325,752 - betA b0311 0.57 +1.1 325,835 - betA b0311 0.62 -0.1 325,835 - betA b0311 0.62 -0.4 325,858 + betA b0311 0.63 +0.2 325,858 + betA b0311 0.63 -0.2 325,873 + betA b0311 0.64 -1.4 325,873 + betA b0311 0.64 +0.4 325,890 - betA b0311 0.65 +0.2 325,914 - betA b0311 0.67 +1.5 325,968 - betA b0311 0.70 -0.6 325,968 - betA b0311 0.70 -0.5 326,137 - betA b0311 0.80 +1.4 326,214 + betA b0311 0.85 +0.8 326,384 - -0.4 326,384 - +0.3 326,435 - +0.9 326,524 - -0.2 326,537 + -0.2 326,691 - betB b0312 0.14 +1.2 326,698 + betB b0312 0.14 +0.7 326,698 + betB b0312 0.14 -0.6 326,722 - betB b0312 0.16 -0.8 326,722 - betB b0312 0.16 -0.8 326,782 - betB b0312 0.20 -0.4 326,782 - betB b0312 0.20 -0.5 326,816 - betB b0312 0.22 -1.1 326,816 - betB b0312 0.22 +2.6 326,871 - betB b0312 0.26 -0.7 326,912 - betB b0312 0.29 +0.4 326,936 + betB b0312 0.31 +0.5 326,944 - betB b0312 0.31 -0.2 327,090 + betB b0312 0.41 -0.0 327,097 + betB b0312 0.42 +0.5 327,097 + betB b0312 0.42 +0.0 327,101 - betB b0312 0.42 +1.1 327,413 - betB b0312 0.63 -2.4 327,422 - betB b0312 0.64 -0.4 327,447 + betB b0312 0.65 +1.6
Or see this region's nucleotide sequence