Strain Fitness in Escherichia coli BW25113 around b3395

Experiment: PBS_cage_1_mice _Feces_22 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_1_mice _Feces_22 hr
3,519,000	+	yrfA	b3392	0.90	+0.8
3,519,013	-				-3.0
3,519,013	-				-0.2
3,519,013	-				-4.8
3,519,027	+				+1.3
3,519,027	+				-5.2
3,519,027	+				+2.7
3,519,113	+	yrfB	b3393	0.19	+0.9
3,519,123	+	yrfB	b3393	0.21	+1.1
3,519,123	+	yrfB	b3393	0.21	+0.2
3,519,150	+	yrfB	b3393	0.27	-0.0
3,519,189	+	yrfB	b3393	0.36	+1.1
3,519,189	+	yrfB	b3393	0.36	-0.7
3,519,290	+	yrfB	b3393	0.59	+1.0
3,519,292	+	yrfB	b3393	0.59	+2.3
3,519,363	-	yrfB	b3393	0.75	+1.1
3,519,429	+				+1.6
3,519,471	+				-0.4
3,519,471	+				-1.3
3,519,483	+				-3.7
3,519,509	+	yrfC	b3394	0.10	+0.7
3,519,509	+	yrfC	b3394	0.10	+1.6
3,519,529	+	yrfC	b3394	0.14	+0.5
3,519,556	-	yrfC	b3394	0.19	+0.4
3,519,556	-	yrfC	b3394	0.19	-1.0
3,519,608	-	yrfC	b3394	0.28	+0.3
3,519,609	+	yrfC	b3394	0.29	-0.9
3,519,609	+	yrfC	b3394	0.29	-0.6
3,519,641	-	yrfC	b3394	0.34	-0.6
3,519,731	-	yrfC	b3394	0.51	+2.7
3,519,877	+	yrfC	b3394	0.78	+1.1
3,519,885	-	yrfC	b3394	0.80	-0.4
3,519,971	-				+1.1
3,519,995	+				+2.4
3,520,003	-				+1.8
3,520,079	+	yrfD	b3395	0.11	-1.4
3,520,098	-	yrfD	b3395	0.13	+3.0
3,520,153	-	yrfD	b3395	0.20	+0.1
3,520,163	-	yrfD	b3395	0.22	+0.1
3,520,193	+	yrfD	b3395	0.26	+1.5
3,520,193	+	yrfD	b3395	0.26	+2.8
3,520,201	-	yrfD	b3395	0.27	+0.9
3,520,215	+	yrfD	b3395	0.28	-0.0
3,520,215	+	yrfD	b3395	0.28	+0.8
3,520,276	+	yrfD	b3395	0.36	+0.5
3,520,279	+	yrfD	b3395	0.37	-0.8
3,520,289	-	yrfD	b3395	0.38	+1.8
3,520,357	-	yrfD	b3395	0.47	-3.6
3,520,357	-	yrfD	b3395	0.47	+1.2
3,520,388	-	yrfD	b3395	0.51	-1.6
3,520,409	-	yrfD	b3395	0.53	+5.4
3,520,427	+	yrfD	b3395	0.56	+0.1
3,520,434	+				+6.2
3,520,436	+	yrfD	b3395	0.57	-0.7
3,520,436	+	yrfD	b3395	0.57	-0.5
3,520,437	-	yrfD	b3395	0.57	+1.4
3,520,468	-	yrfD	b3395	0.61	+1.6
3,520,586	+	yrfD	b3395	0.76	+1.5
3,520,637	+	yrfD	b3395	0.82	+2.6
3,520,637	+	yrfD	b3395	0.82	+2.2
3,520,775	+				+1.8
3,520,793	-				-0.8
3,520,831	+				+1.8
3,520,918	+				-4.8
3,520,928	+				-1.4
3,520,928	-				+1.2
3,520,928	-				-3.6
3,520,938	-				+0.5
3,520,962	+				-1.4
3,520,970	+				-1.9
3,520,970	+				-1.0
3,520,970	+				+3.0
3,520,970	-				-0.2
3,520,978	-				-4.2
3,520,994	-				+0.2
3,521,004	-				-0.1
3,521,004	-				+1.5
3,521,047	-				+0.6
3,521,047	-				-0.3
3,521,052	+				+2.0
3,521,067	+				+0.3
3,521,075	-				-1.2
3,521,075	-				-0.8
3,521,085	-				-0.1
3,521,085	-				-3.0
3,521,184	-	mrcA	b3396	0.11	-1.3
3,521,198	-	mrcA	b3396	0.12	+0.3
3,521,238	+	mrcA	b3396	0.14	-1.4
3,521,251	+	mrcA	b3396	0.14	-3.8
3,521,251	-	mrcA	b3396	0.14	-1.0
3,521,256	+	mrcA	b3396	0.14	-4.3
3,521,256	+	mrcA	b3396	0.14	+0.8
3,521,282	+	mrcA	b3396	0.15	-1.1
3,521,287	+	mrcA	b3396	0.15	+0.7
3,521,295	-	mrcA	b3396	0.16	-4.3
3,521,295	-	mrcA	b3396	0.16	-0.3
3,521,343	+	mrcA	b3396	0.18	+1.6
3,521,349	-	mrcA	b3396	0.18	-2.0
3,521,361	+	mrcA	b3396	0.18	+0.3
3,521,366	-	mrcA	b3396	0.19	+1.2
3,521,366	-	mrcA	b3396	0.19	+0.3
3,521,408	+	mrcA	b3396	0.20	+0.3
3,521,408	+				-1.1
3,521,408	+	mrcA	b3396	0.20	-0.3
3,521,408	+	mrcA	b3396	0.20	-0.9
3,521,416	-	mrcA	b3396	0.20	-3.8
3,521,443	-	mrcA	b3396	0.22	-0.8
3,521,525	+	mrcA	b3396	0.25	-3.5
3,521,555	+	mrcA	b3396	0.26	-1.6
3,521,555	+	mrcA	b3396	0.26	-0.6
3,521,555	+	mrcA	b3396	0.26	-2.3
3,521,555	+	mrcA	b3396	0.26	+0.5
3,521,555	+	mrcA	b3396	0.26	-1.2
3,521,561	-	mrcA	b3396	0.26	+0.9
3,521,591	-	mrcA	b3396	0.27	-1.8
3,521,591	-	mrcA	b3396	0.27	-2.1
3,521,599	+	mrcA	b3396	0.28	-1.8
3,521,599	+	mrcA	b3396	0.28	+2.1
3,521,599	-	mrcA	b3396	0.28	+0.5
3,521,601	+	mrcA	b3396	0.28	-0.5
3,521,601	+	mrcA	b3396	0.28	+0.8
3,521,607	-	mrcA	b3396	0.28	-0.3
3,521,626	-	mrcA	b3396	0.29	-2.1
3,521,626	-	mrcA	b3396	0.29	-1.3
3,521,626	-	mrcA	b3396	0.29	+0.1
3,521,694	-	mrcA	b3396	0.31	+1.5
3,521,694	-	mrcA	b3396	0.31	-1.1
3,521,694	-	mrcA	b3396	0.31	+2.4
3,521,694	-	mrcA	b3396	0.31	+3.4
3,521,708	+	mrcA	b3396	0.32	+1.1
3,521,728	+	mrcA	b3396	0.33	+1.1
3,521,728	+	mrcA	b3396	0.33	-4.8