Strain Fitness in Escherichia coli BW25113 around b0691

Experiment: PBS_cage_1_mice _Feces_22 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_1_mice _Feces_22 hr
714,206	+	pgm	b0688	0.87	-2.3
714,260	+				-2.4
714,260	+				-2.4
714,309	-				-1.0
714,599	+				-1.0
714,653	-				-0.2
714,655	+				+0.8
714,659	+				+1.2
714,659	+				+0.3
714,667	-				-1.4
714,689	-	ybfP	b0689	0.11	+2.7
714,689	-	ybfP	b0689	0.11	-0.9
714,691	+	ybfP	b0689	0.11	+3.5
714,769	-	ybfP	b0689	0.27	-0.9
714,769	-	ybfP	b0689	0.27	+0.7
714,842	+	ybfP	b0689	0.42	-2.0
714,842	+	ybfP	b0689	0.42	-0.9
714,864	+	ybfP	b0689	0.46	-0.8
714,884	+	ybfP	b0689	0.50	+1.0
714,884	+	ybfP	b0689	0.50	+0.0
714,949	-	ybfP	b0689	0.63	-0.1
714,949	-	ybfP	b0689	0.63	+0.4
714,951	-	ybfP	b0689	0.64	+2.1
714,951	-	ybfP	b0689	0.64	+0.5
714,952	-	ybfP	b0689	0.64	-0.0
714,974	+	ybfP	b0689	0.68	+1.3
714,979	+	ybfP	b0689	0.69	+0.4
714,986	+	ybfP	b0689	0.71	+0.3
714,986	+	ybfP	b0689	0.71	-1.0
714,986	+	ybfP	b0689	0.71	+1.8
714,986	+	ybfP	b0689	0.71	+2.1
714,987	-	ybfP	b0689	0.71	+1.0
714,987	-	ybfP	b0689	0.71	-0.7
714,993	-	ybfP	b0689	0.72	-2.7
714,994	-	ybfP	b0689	0.73	+1.6
714,997	+	ybfP	b0689	0.73	+1.3
714,997	+	ybfP	b0689	0.73	-0.5
715,019	+	ybfP	b0689	0.78	+0.2
715,052	-	ybfP	b0689	0.84	+1.9
715,067	+	ybfP	b0689	0.87	+0.8
715,068	+	ybfP	b0689	0.87	+0.9
715,158	-				-1.0
715,159	-				-0.5
715,159	-				+0.5
715,169	-				-1.7
715,169	-				+1.7
715,175	-				+0.9
715,175	-				+0.3
715,207	+				+2.3
715,262	-	ybfG	b0691	0.14	+2.2
715,262	-	ybfG	b0691	0.14	+1.8
715,264	+	ybfG	b0691	0.14	+1.5
715,272	+	ybfG	b0691	0.16	+2.5
715,272	-	ybfG	b0691	0.16	-0.1
715,272	-	ybfG	b0691	0.16	+1.7
715,287	-	ybfG	b0691	0.18	+2.4
715,305	-	ybfG	b0691	0.21	-1.6
715,305	-	ybfG	b0691	0.21	-3.4
715,431	-	ybfG	b0691	0.40	+0.3
715,450	+	ybfG	b0691	0.43	+2.5
715,468	-	ybfG	b0691	0.46	-1.7
715,469	+	ybfG	b0691	0.46	-0.5
715,469	+	ybfG	b0691	0.46	-1.3
715,477	-	ybfG	b0691	0.47	+0.1
715,482	-	ybfG	b0691	0.48	-2.4
715,513	+	ybfG	b0691	0.53	+4.6
715,542	-	ybfG	b0691	0.57	-3.7
715,569	+	ybfG	b0691	0.61	+1.3
715,587	-	ybfG	b0691	0.64	+2.5
715,598	-	ybfG	b0691	0.66	-0.3
715,598	-	ybfG	b0691	0.66	-3.5
715,606	-	ybfG	b0691	0.67	+0.6
715,607	-	ybfG	b0691	0.67	-3.6
715,608	-	ybfG	b0691	0.67	+0.9
715,611	-	ybfG	b0691	0.68	-1.1
715,611	-	ybfG	b0691	0.68	+3.4
715,611	-	ybfG	b0691	0.68	-3.4
715,611	-	ybfG	b0691	0.68	+0.6
715,618	+	ybfG	b0691	0.69	-4.1
715,633	+	ybfG	b0691	0.71	+1.6
715,642	-	ybfG	b0691	0.73	-1.9
715,647	-	ybfG	b0691	0.73	+0.8
715,649	-	ybfG	b0691	0.74	-3.7
715,654	-	ybfG	b0691	0.74	-1.0
715,667	+	ybfG	b0691	0.76	+1.9
715,678	+	ybfG	b0691	0.78	+1.0
715,694	+	ybfG	b0691	0.80	+0.6
715,694	+	ybfG	b0691	0.80	-0.4
715,724	+	ybfG	b0691	0.85	+1.5
715,724	+	ybfG	b0691	0.85	-3.1
715,741	-	ybfG	b0691	0.88	-0.7
715,743	-	ybfG	b0691	0.88	-1.3
715,749	-	ybfG	b0691	0.89	+2.5
715,749	-	ybfG	b0691	0.89	-0.5
715,761	+				+0.4
715,761	+				+1.0
715,761	+				-0.4
715,761	+				-0.6
715,761	+				-1.2
715,761	+				-0.1
715,796	+				-2.3
715,796	+				+1.0
715,804	-				+2.5
715,804	-				+0.1
715,804	-				-0.7
715,820	+				+0.1
715,828	+				-0.5
715,830	+				-2.9
715,830	+				-2.3
715,830	+				-3.3
715,833	+				+0.0
715,834	+				-1.2
715,836	-				-0.1
715,838	+				-2.7
715,841	+				+0.3
715,846	-				-0.1
715,846	-				+1.5
715,846	-				-2.4
715,848	+				+0.7
715,850	+				-0.6
715,930	-				-0.5
715,949	+				+2.5
715,962	-	ybfI	b4636	0.12	-1.0
715,964	-	ybfI	b4636	0.13	-1.9
715,970	-	ybfI	b4636	0.17	+0.8
715,998	+	ybfI	b4636	0.36	+2.3
715,999	+	ybfI	b4636	0.37	-1.1
716,007	+	ybfI	b4636	0.42	-3.4
716,007	+	ybfI	b4636	0.42	+3.2
716,007	+	ybfI	b4636	0.42	-0.3
716,007	-	ybfI	b4636	0.42	-0.1
716,007	-	ybfI	b4636	0.42	-2.2
716,007	-	ybfI	b4636	0.42	+1.1
716,009	+	ybfI	b4636	0.43	-0.5
716,017	-	ybfI	b4636	0.49	+2.1
716,030	+	ybfI	b4636	0.57	+0.7
716,050	+	ybfI	b4636	0.71	+2.9
716,062	+	ybfI	b4636	0.79	+3.8
716,069	+	ybfI	b4636	0.83	-0.5
716,069	+	ybfI	b4636	0.83	+4.1
716,069	+	ybfI	b4636	0.83	-3.1
716,069	+	ybfI	b4636	0.83	+1.2
716,077	+	ybfI	b4636	0.89	+2.5
716,077	-	ybfI	b4636	0.89	-0.8
716,077	-	ybfI	b4636	0.89	+3.3
716,077	-	ybfI	b4636	0.89	+2.6
716,083	-				+2.6
716,085	-				+0.9
716,085	-				+1.8
716,085	-				-0.2
716,085	-				-3.5
716,090	-				+1.6
716,101	+				-0.4
716,113	+				+3.3
716,136	-				-0.8
716,146	-				-0.2
716,207	-				+1.0
716,211	+				+2.5
716,212	-				-0.5
716,212	-				+0.3
716,212	-				+0.6
716,212	-				+2.7
716,213	-				-0.5
716,213	-				-0.8
716,213	-				+0.5
716,219	-				-0.3
716,219	-				+0.4
716,219	-				-0.8
716,219	-				-0.4
716,219	-				+0.5
716,219	-				-0.8
716,219	-				+1.2
716,219	-				+0.6
716,219	-				+2.2
716,227	-				-1.4
716,227	-				+0.6
716,229	-				-0.9
716,229	-				-1.3
716,233	-				-1.2
716,233	-				+3.1
716,233	-				+0.8
716,233	-				-1.9
716,234	-				+0.7
716,235	+				+2.5
716,240	+				+1.5
716,240	+				-1.0
716,244	-				+1.7
716,244	-				+1.2
716,248	+				+0.5
716,250	+				+3.8
716,255	+				-2.0
716,255	+				-1.2
716,258	-				+0.9
716,258	-				-0.8
716,267	+				+1.1
716,280	+				+1.8
716,280	+				+0.4
716,280	-				+0.4
716,280	-				-1.5
716,280	-				+3.0
716,290	-				-0.4
716,292	+				-2.9
716,293	-				-3.1
716,300	-				+1.4
716,346	-	potE	b0692	0.13	+0.2
716,438	-	potE	b0692	0.20	+0.7
716,439	+	potE	b0692	0.20	-0.3
716,439	+	potE	b0692	0.20	-0.9
716,459	-	potE	b0692	0.22	-0.0
716,459	-	potE	b0692	0.22	+1.9
716,462	+	potE	b0692	0.22	-2.8
716,462	+	potE	b0692	0.22	+1.7
716,475	-	potE	b0692	0.23	-0.1
716,522	-	potE	b0692	0.27	+2.1
716,663	-	potE	b0692	0.37	-0.6
716,702	+	potE	b0692	0.40	-1.2
716,710	-	potE	b0692	0.41	+1.4
716,763	+	potE	b0692	0.45	+0.9
716,763	+	potE	b0692	0.45	-0.1
716,788	+	potE	b0692	0.47	+0.3
716,788	+	potE	b0692	0.47	-2.7