Experiment: PBS_cage_1_mice _Feces_16 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt djlC and hscC are separated by 59 nucleotides hscC and rihA are separated by 83 nucleotides
b0649: djlC - Hsc56 co-chaperone of HscC (NCBI), at 679,435 to 680,886
djlC
b0650: hscC - Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI), at 680,946 to 682,616
hscC
b0651: rihA - ribonucleoside hydrolase 1 (NCBI), at 682,700 to 683,635
rihA
Position (kb) 680
681
682
683 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 679.964 kb on - strand, within djlC at 679.964 kb on - strand, within djlC at 679.979 kb on - strand, within djlC at 680.012 kb on + strand, within djlC at 680.020 kb on - strand, within djlC at 680.034 kb on - strand, within djlC at 680.034 kb on - strand, within djlC at 680.136 kb on - strand, within djlC at 680.160 kb on - strand, within djlC at 680.196 kb on + strand, within djlC at 680.196 kb on + strand, within djlC at 680.234 kb on + strand, within djlC at 680.234 kb on + strand, within djlC at 680.580 kb on - strand, within djlC at 680.632 kb on + strand, within djlC at 680.632 kb on + strand, within djlC at 680.643 kb on + strand, within djlC at 680.643 kb on + strand, within djlC at 680.841 kb on + strand at 680.857 kb on - strand at 680.936 kb on + strand at 681.182 kb on - strand, within hscC at 681.210 kb on + strand, within hscC at 681.214 kb on - strand, within hscC at 681.390 kb on + strand, within hscC at 681.390 kb on + strand, within hscC at 681.466 kb on - strand, within hscC at 681.949 kb on + strand, within hscC at 682.057 kb on + strand, within hscC at 682.065 kb on + strand, within hscC at 682.073 kb on - strand, within hscC at 682.133 kb on - strand, within hscC at 682.140 kb on + strand, within hscC at 682.141 kb on + strand, within hscC at 682.141 kb on + strand, within hscC at 682.156 kb on + strand, within hscC at 682.156 kb on + strand, within hscC at 682.159 kb on + strand, within hscC at 682.169 kb on + strand, within hscC at 682.181 kb on + strand, within hscC at 682.181 kb on + strand, within hscC at 682.197 kb on + strand, within hscC at 682.213 kb on + strand, within hscC at 682.213 kb on + strand, within hscC at 682.217 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.222 kb on + strand, within hscC at 682.270 kb on + strand, within hscC at 682.317 kb on + strand, within hscC at 682.322 kb on + strand, within hscC at 682.332 kb on + strand, within hscC at 682.332 kb on + strand, within hscC at 682.337 kb on + strand, within hscC at 682.337 kb on + strand, within hscC at 682.337 kb on + strand, within hscC at 682.346 kb on + strand, within hscC at 682.352 kb on + strand, within hscC at 682.352 kb on + strand, within hscC at 682.352 kb on + strand, within hscC at 682.376 kb on + strand, within hscC at 682.414 kb on - strand, within hscC at 682.439 kb on + strand, within hscC at 682.447 kb on - strand, within hscC at 682.447 kb on - strand, within hscC at 682.577 kb on - strand at 682.591 kb on - strand at 682.591 kb on - strand at 682.592 kb on - strand at 682.667 kb on - strand at 682.705 kb on - strand at 682.705 kb on - strand at 682.738 kb on - strand at 682.738 kb on - strand at 682.741 kb on - strand at 682.747 kb on + strand at 682.749 kb on - strand at 682.749 kb on - strand at 682.763 kb on - strand at 682.763 kb on - strand at 682.763 kb on - strand at 682.773 kb on - strand at 682.781 kb on - strand at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.833 kb on - strand, within rihA at 682.850 kb on - strand, within rihA at 682.850 kb on - strand, within rihA at 682.859 kb on + strand, within rihA at 682.867 kb on - strand, within rihA at 682.869 kb on - strand, within rihA at 682.877 kb on - strand, within rihA at 682.882 kb on - strand, within rihA at 682.882 kb on - strand, within rihA at 682.892 kb on - strand, within rihA at 682.899 kb on + strand, within rihA at 682.901 kb on - strand, within rihA at 682.905 kb on + strand, within rihA at 682.906 kb on - strand, within rihA at 682.910 kb on - strand, within rihA at 682.910 kb on - strand, within rihA at 682.911 kb on + strand, within rihA at 682.911 kb on + strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.913 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 682.921 kb on - strand, within rihA at 683.012 kb on - strand, within rihA at 683.065 kb on + strand, within rihA at 683.083 kb on - strand, within rihA at 683.083 kb on - strand, within rihA at 683.171 kb on + strand, within rihA at 683.178 kb on - strand at 683.269 kb on + strand, within rihA at 683.284 kb on - strand, within rihA at 683.570 kb on + strand at 683.575 kb on + strand at 683.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_1_mice _Feces_16 hr remove 679,964 - djlC b0649 0.36 -0.2 679,964 - djlC b0649 0.36 -0.4 679,979 - djlC b0649 0.37 -2.0 680,012 + djlC b0649 0.40 +1.2 680,020 - djlC b0649 0.40 -3.7 680,034 - djlC b0649 0.41 +0.2 680,034 - djlC b0649 0.41 -2.7 680,136 - djlC b0649 0.48 -1.8 680,160 - djlC b0649 0.50 +0.4 680,196 + djlC b0649 0.52 +2.6 680,196 + djlC b0649 0.52 +2.8 680,234 + djlC b0649 0.55 -1.1 680,234 + djlC b0649 0.55 +3.2 680,580 - djlC b0649 0.79 +0.7 680,632 + djlC b0649 0.82 +2.9 680,632 + djlC b0649 0.82 +0.6 680,643 + djlC b0649 0.83 +0.9 680,643 + djlC b0649 0.83 +0.5 680,841 + -0.8 680,857 - +0.6 680,936 + +0.6 681,182 - hscC b0650 0.14 +0.3 681,210 + hscC b0650 0.16 -2.2 681,214 - hscC b0650 0.16 -0.3 681,390 + hscC b0650 0.27 +1.9 681,390 + hscC b0650 0.27 +0.1 681,466 - hscC b0650 0.31 -0.7 681,949 + hscC b0650 0.60 -2.2 682,057 + hscC b0650 0.66 -1.4 682,065 + hscC b0650 0.67 -1.9 682,073 - hscC b0650 0.67 -0.2 682,133 - hscC b0650 0.71 -3.9 682,140 + hscC b0650 0.71 -0.9 682,141 + hscC b0650 0.72 -4.1 682,141 + hscC b0650 0.72 +0.7 682,156 + hscC b0650 0.72 -1.0 682,156 + hscC b0650 0.72 -2.0 682,159 + hscC b0650 0.73 -1.0 682,169 + hscC b0650 0.73 +0.7 682,181 + hscC b0650 0.74 -4.8 682,181 + hscC b0650 0.74 -4.6 682,197 + hscC b0650 0.75 -1.1 682,213 + hscC b0650 0.76 -1.8 682,213 + hscC b0650 0.76 -1.4 682,217 + hscC b0650 0.76 +0.7 682,222 + hscC b0650 0.76 -0.7 682,222 + hscC b0650 0.76 +0.3 682,222 + hscC b0650 0.76 +0.2 682,222 + hscC b0650 0.76 -0.3 682,270 + hscC b0650 0.79 +1.9 682,317 + hscC b0650 0.82 -0.7 682,322 + hscC b0650 0.82 +0.9 682,332 + hscC b0650 0.83 +0.2 682,332 + hscC b0650 0.83 -0.8 682,337 + hscC b0650 0.83 -1.3 682,337 + hscC b0650 0.83 -2.6 682,337 + hscC b0650 0.83 +3.7 682,346 + hscC b0650 0.84 -1.6 682,352 + hscC b0650 0.84 -1.7 682,352 + hscC b0650 0.84 -1.8 682,352 + hscC b0650 0.84 -3.0 682,376 + hscC b0650 0.86 +0.6 682,414 - hscC b0650 0.88 +2.4 682,439 + hscC b0650 0.89 +1.6 682,447 - hscC b0650 0.90 +2.8 682,447 - hscC b0650 0.90 +0.2 682,577 - +0.2 682,591 - -0.5 682,591 - +1.8 682,592 - -4.3 682,667 - -2.7 682,705 - -0.8 682,705 - -0.9 682,738 - +1.7 682,738 - +1.8 682,741 - +0.8 682,747 + +2.8 682,749 - +1.1 682,749 - -0.8 682,763 - -0.3 682,763 - -0.2 682,763 - +1.1 682,773 - -3.7 682,781 - +1.7 682,833 - rihA b0651 0.14 -0.6 682,833 - rihA b0651 0.14 +0.5 682,833 - rihA b0651 0.14 +1.5 682,833 - rihA b0651 0.14 -3.5 682,850 - rihA b0651 0.16 +0.7 682,850 - rihA b0651 0.16 -1.9 682,859 + rihA b0651 0.17 +2.9 682,867 - rihA b0651 0.18 +1.3 682,869 - rihA b0651 0.18 +2.8 682,877 - rihA b0651 0.19 +2.4 682,882 - rihA b0651 0.19 -0.6 682,882 - rihA b0651 0.19 +1.2 682,892 - rihA b0651 0.21 +1.2 682,899 + rihA b0651 0.21 +0.5 682,901 - rihA b0651 0.21 +0.5 682,905 + rihA b0651 0.22 +1.2 682,906 - rihA b0651 0.22 -4.6 682,910 - rihA b0651 0.22 +1.5 682,910 - rihA b0651 0.22 +1.6 682,911 + rihA b0651 0.23 -1.0 682,911 + rihA b0651 0.23 +2.3 682,913 - rihA b0651 0.23 -0.1 682,913 - rihA b0651 0.23 -0.5 682,913 - rihA b0651 0.23 -0.8 682,913 - rihA b0651 0.23 -1.1 682,913 - rihA b0651 0.23 +0.9 682,913 - rihA b0651 0.23 -0.5 682,921 - rihA b0651 0.24 -4.8 682,921 - rihA b0651 0.24 -0.0 682,921 - rihA b0651 0.24 +0.5 682,921 - rihA b0651 0.24 -1.1 683,012 - rihA b0651 0.33 +1.8 683,065 + rihA b0651 0.39 -0.7 683,083 - rihA b0651 0.41 -1.9 683,083 - rihA b0651 0.41 +2.9 683,171 + rihA b0651 0.50 +0.4 683,178 - -1.7 683,269 + rihA b0651 0.61 +0.0 683,284 - rihA b0651 0.62 +1.7 683,570 + +1.9 683,575 + +0.5 683,595 + +0.7
Or see this region's nucleotide sequence