Experiment: PBS_cage_1_mice _Feces_16 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaS and ybaT are separated by 2 nucleotides ybaT and cueR are separated by 124 nucleotides cueR and ybbJ are separated by 0 nucleotides ybbJ and ybbK overlap by 4 nucleotides
b0485: ybaS - predicted glutaminase (NCBI), at 510,865 to 511,797
ybaS
b0486: ybaT - predicted transporter (NCBI), at 511,800 to 513,092
ybaT
b0487: cueR - DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI), at 513,217 to 513,624
cueR
b0488: ybbJ - conserved inner membrane protein (RefSeq), at 513,625 to 514,083
ybbJ
b0489: ybbK - predicted protease, membrane anchored (NCBI), at 514,080 to 514,997
ybbK
Position (kb) 511
512
513
514 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 510.844 kb on + strand at 510.903 kb on + strand at 510.903 kb on + strand at 510.979 kb on - strand, within ybaS at 510.979 kb on - strand, within ybaS at 511.000 kb on - strand, within ybaS at 511.172 kb on + strand, within ybaS at 511.172 kb on + strand, within ybaS at 511.359 kb on + strand, within ybaS at 511.389 kb on - strand, within ybaS at 511.392 kb on - strand, within ybaS at 511.434 kb on + strand, within ybaS at 511.583 kb on + strand, within ybaS at 511.583 kb on + strand, within ybaS at 511.673 kb on + strand, within ybaS at 511.673 kb on + strand, within ybaS at 511.673 kb on + strand, within ybaS at 511.980 kb on + strand, within ybaT at 512.081 kb on + strand, within ybaT at 512.081 kb on + strand, within ybaT at 512.171 kb on + strand, within ybaT at 512.239 kb on - strand, within ybaT at 512.413 kb on - strand, within ybaT at 512.414 kb on - strand, within ybaT at 512.514 kb on - strand, within ybaT at 512.567 kb on - strand, within ybaT at 512.604 kb on + strand, within ybaT at 512.771 kb on + strand, within ybaT at 512.830 kb on + strand, within ybaT at 512.830 kb on + strand, within ybaT at 512.846 kb on - strand, within ybaT at 512.886 kb on + strand, within ybaT at 512.890 kb on + strand, within ybaT at 512.953 kb on + strand, within ybaT at 512.958 kb on + strand, within ybaT at 512.958 kb on + strand, within ybaT at 512.991 kb on + strand at 512.998 kb on + strand at 512.998 kb on + strand at 513.013 kb on - strand at 513.013 kb on - strand at 513.039 kb on + strand at 513.039 kb on + strand at 513.057 kb on - strand at 513.057 kb on - strand at 513.057 kb on - strand at 513.077 kb on + strand at 513.077 kb on + strand at 513.095 kb on - strand at 513.107 kb on + strand at 513.109 kb on + strand at 513.182 kb on + strand at 513.205 kb on - strand at 513.287 kb on - strand, within cueR at 513.295 kb on - strand, within cueR at 513.431 kb on - strand, within cueR at 513.480 kb on + strand, within cueR at 513.537 kb on - strand, within cueR at 513.537 kb on - strand, within cueR at 513.700 kb on - strand, within ybbJ at 513.728 kb on - strand, within ybbJ at 513.742 kb on + strand, within ybbJ at 513.742 kb on + strand, within ybbJ at 513.949 kb on - strand, within ybbJ at 513.949 kb on - strand, within ybbJ at 513.958 kb on + strand, within ybbJ at 513.958 kb on + strand, within ybbJ at 513.977 kb on + strand, within ybbJ
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_1_mice _Feces_16 hr remove 510,844 + +1.6 510,903 + +2.2 510,903 + -0.7 510,979 - ybaS b0485 0.12 -1.8 510,979 - ybaS b0485 0.12 -0.1 511,000 - ybaS b0485 0.14 -0.6 511,172 + ybaS b0485 0.33 +1.7 511,172 + ybaS b0485 0.33 +1.2 511,359 + ybaS b0485 0.53 -1.8 511,389 - ybaS b0485 0.56 +1.8 511,392 - ybaS b0485 0.56 +1.3 511,434 + ybaS b0485 0.61 +3.2 511,583 + ybaS b0485 0.77 -0.0 511,583 + ybaS b0485 0.77 -0.7 511,673 + ybaS b0485 0.87 +1.8 511,673 + ybaS b0485 0.87 -0.9 511,673 + ybaS b0485 0.87 +2.2 511,980 + ybaT b0486 0.14 -0.1 512,081 + ybaT b0486 0.22 +0.3 512,081 + ybaT b0486 0.22 -1.3 512,171 + ybaT b0486 0.29 +3.7 512,239 - ybaT b0486 0.34 -3.0 512,413 - ybaT b0486 0.47 -0.9 512,414 - ybaT b0486 0.47 -1.2 512,514 - ybaT b0486 0.55 -0.3 512,567 - ybaT b0486 0.59 +0.1 512,604 + ybaT b0486 0.62 +2.3 512,771 + ybaT b0486 0.75 +0.5 512,830 + ybaT b0486 0.80 +0.5 512,830 + ybaT b0486 0.80 +2.3 512,846 - ybaT b0486 0.81 +0.8 512,886 + ybaT b0486 0.84 +2.3 512,890 + ybaT b0486 0.84 -0.6 512,953 + ybaT b0486 0.89 -1.4 512,958 + ybaT b0486 0.90 +1.6 512,958 + ybaT b0486 0.90 +0.1 512,991 + -4.2 512,998 + +2.3 512,998 + -1.4 513,013 - +0.1 513,013 - -0.4 513,039 + -2.2 513,039 + -1.5 513,057 - +1.1 513,057 - +1.2 513,057 - +2.1 513,077 + +1.8 513,077 + -1.0 513,095 - -0.1 513,107 + -5.1 513,109 + -0.6 513,182 + +0.5 513,205 - +2.6 513,287 - cueR b0487 0.17 +0.1 513,295 - cueR b0487 0.19 -0.4 513,431 - cueR b0487 0.52 +1.8 513,480 + cueR b0487 0.64 -0.6 513,537 - cueR b0487 0.78 -1.3 513,537 - cueR b0487 0.78 +1.7 513,700 - ybbJ b0488 0.16 +0.3 513,728 - ybbJ b0488 0.22 +0.5 513,742 + ybbJ b0488 0.25 +1.2 513,742 + ybbJ b0488 0.25 -4.2 513,949 - ybbJ b0488 0.71 -1.3 513,949 - ybbJ b0488 0.71 +0.1 513,958 + ybbJ b0488 0.73 -2.6 513,958 + ybbJ b0488 0.73 -0.8 513,977 + ybbJ b0488 0.77 -2.7
Or see this region's nucleotide sequence