Strain Fitness in Escherichia coli BW25113 around b3881

Experiment: Phage_N4_cage_3_mouse_4_Cecum_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phage_N4_cage_3_mouse_4_Cecum_40 hr
4,068,929	+	yihS	b3880	0.31	-0.3
4,068,937	-	yihS	b3880	0.32	-0.6
4,068,952	+	yihS	b3880	0.33	-1.1
4,068,975	-	yihS	b3880	0.35	-5.1
4,068,988	+	yihS	b3880	0.36	+1.6
4,069,003	+	yihS	b3880	0.37	-0.3
4,069,006	-	yihS	b3880	0.38	-0.1
4,069,038	+	yihS	b3880	0.40	+1.1
4,069,038	+	yihS	b3880	0.40	+0.1
4,069,046	-	yihS	b3880	0.41	+1.5
4,069,049	-	yihS	b3880	0.41	+0.7
4,069,052	-	yihS	b3880	0.41	+1.4
4,069,052	-	yihS	b3880	0.41	+1.3
4,069,052	-	yihS	b3880	0.41	+0.2
4,069,095	-	yihS	b3880	0.45	-0.4
4,069,095	-	yihS	b3880	0.45	+1.1
4,069,115	+	yihS	b3880	0.46	+0.2
4,069,159	+	yihS	b3880	0.50	+0.4
4,069,167	-	yihS	b3880	0.51	+1.6
4,069,189	+	yihS	b3880	0.52	-0.3
4,069,248	-	yihS	b3880	0.57	+0.7
4,069,248	-	yihS	b3880	0.57	+1.3
4,069,264	-	yihS	b3880	0.58	+2.0
4,069,264	-	yihS	b3880	0.58	+0.0
4,069,320	-	yihS	b3880	0.63	+1.6
4,069,329	-	yihS	b3880	0.64	-0.1
4,069,329	-	yihS	b3880	0.64	-0.7
4,069,397	-	yihS	b3880	0.69	-0.1
4,069,402	+	yihS	b3880	0.70	-2.5
4,069,431	-	yihS	b3880	0.72	-2.0
4,069,455	+	yihS	b3880	0.74	+1.1
4,069,463	-	yihS	b3880	0.74	+0.5
4,069,492	+	yihS	b3880	0.77	+0.3
4,069,492	+	yihS	b3880	0.77	-0.0
4,069,499	-	yihS	b3880	0.77	+1.2
4,069,556	+	yihS	b3880	0.82	+1.3
4,069,556	+	yihS	b3880	0.82	-0.5
4,069,568	+	yihS	b3880	0.83	-4.7
4,069,568	+	yihS	b3880	0.83	-4.9
4,069,619	-	yihS	b3880	0.87	-4.4
4,069,619	-	yihS	b3880	0.87	-2.2
4,069,620	-	yihS	b3880	0.87	+1.5
4,069,624	+	yihS	b3880	0.87	-0.6
4,069,632	+	yihS	b3880	0.88	-1.3
4,069,632	+	yihS	b3880	0.88	-5.2
4,069,634	-	yihS	b3880	0.88	+0.6
4,069,635	-	yihS	b3880	0.88	+0.8
4,069,635	-	yihS	b3880	0.88	+0.3
4,069,912	+	yihT	b3881	0.13	-1.6
4,069,912	+	yihT	b3881	0.13	+1.9
4,070,016	+	yihT	b3881	0.25	+1.0
4,070,016	+	yihT	b3881	0.25	+1.2
4,070,068	+	yihT	b3881	0.31	+0.2
4,070,081	-	yihT	b3881	0.32	-6.2
4,070,112	-	yihT	b3881	0.36	-1.5
4,070,115	+	yihT	b3881	0.36	+0.1
4,070,205	+	yihT	b3881	0.47	-4.9
4,070,205	+	yihT	b3881	0.47	-5.1
4,070,217	-	yihT	b3881	0.48	-1.8
4,070,225	-	yihT	b3881	0.49	-1.4
4,070,225	-	yihT	b3881	0.49	-2.1
4,070,231	+	yihT	b3881	0.49	+1.7
4,070,231	-	yihT	b3881	0.49	+0.6
4,070,296	-	yihT	b3881	0.57	-0.3
4,070,296	-	yihT	b3881	0.57	-2.1
4,070,333	-	yihT	b3881	0.61	-4.6
4,070,341	-	yihT	b3881	0.62	+0.0
4,070,376	+	yihT	b3881	0.66	-0.7
4,070,385	-	yihT	b3881	0.67	-2.5
4,070,385	-	yihT	b3881	0.67	-4.3
4,070,385	-	yihT	b3881	0.67	+0.4
4,070,510	+	yihT	b3881	0.81	+2.1
4,070,510	+	yihT	b3881	0.81	-3.5
4,070,510	-	yihT	b3881	0.81	-3.9
4,070,591	+				-0.4
4,070,591	+				+0.8
4,070,598	+				-5.5
4,070,598	+				-1.3
4,070,658	+				-4.5
4,070,658	+				+2.3
4,070,661	+				-0.3
4,070,666	-				-0.1
4,070,678	+				+0.1
4,070,684	+				+1.2
4,070,684	+				-0.6
4,070,721	+				-0.4
4,070,732	+				-0.5
4,070,732	+				-1.2
4,070,740	-				+2.6
4,070,740	-				+2.1
4,070,740	-				+3.0
4,070,742	+				-4.7
4,070,742	+				+1.1
4,070,742	+				-1.0
4,070,756	+				-4.6
4,070,759	-				+3.0
4,070,761	+				+0.7
4,070,769	-				+2.9
4,070,888	-	yihU	b3882	0.21	-1.0
4,070,925	-	yihU	b3882	0.25	+2.5
4,070,925	-	yihU	b3882	0.25	+0.8
4,070,946	-	yihU	b3882	0.28	-3.0
4,070,977	+	yihU	b3882	0.31	+1.3
4,071,052	-	yihU	b3882	0.39	-5.0
4,071,068	-	yihU	b3882	0.41	+0.9
4,071,079	-	yihU	b3882	0.42	-4.4
4,071,124	+	yihU	b3882	0.47	-0.1
4,071,140	+	yihU	b3882	0.49	-1.2
4,071,149	+	yihU	b3882	0.50	+1.0
4,071,149	+	yihU	b3882	0.50	+1.5
4,071,176	-	yihU	b3882	0.53	+1.0
4,071,189	+	yihU	b3882	0.55	-4.4
4,071,189	+	yihU	b3882	0.55	-0.2
4,071,221	+	yihU	b3882	0.58	+0.7
4,071,240	-	yihU	b3882	0.60	+0.9
4,071,290	+	yihU	b3882	0.66	-0.3
4,071,290	+	yihU	b3882	0.66	-1.7
4,071,300	+	yihU	b3882	0.67	-0.8
4,071,465	-	yihU	b3882	0.86	+1.1
4,071,478	+	yihU	b3882	0.87	+2.0
4,071,478	+	yihU	b3882	0.87	+0.7
4,071,524	-				+0.9
4,071,524	-				-0.8