Strain Fitness in Escherichia coli BW25113 around b3363

Experiment: Phage_N4_cage_3_mouse_4_Cecum_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phage_N4_cage_3_mouse_4_Cecum_40 hr
3,488,796	-				-4.1
3,488,796	-				-0.2
3,488,796	-				+1.7
3,488,835	+				-1.3
3,488,888	-				+1.0
3,488,923	+				-0.8
3,488,923	+				-2.1
3,488,943	-				+0.6
3,488,949	+	fic	b3361	0.11	-2.4
3,488,953	-	fic	b3361	0.12	+0.6
3,488,961	-	fic	b3361	0.13	-1.0
3,489,045	+	fic	b3361	0.27	+1.0
3,489,079	-	fic	b3361	0.33	+0.5
3,489,150	-	fic	b3361	0.44	+1.3
3,489,278	-	fic	b3361	0.66	+0.4
3,489,278	-	fic	b3361	0.66	+0.3
3,489,341	+	fic	b3361	0.76	-0.7
3,489,341	+				+0.5
3,489,341	+	fic	b3361	0.76	+0.8
3,489,343	-	fic	b3361	0.76	-3.3
3,489,427	-				+0.5
3,489,427	-				+1.2
3,489,435	-				+0.3
3,489,439	-				-1.0
3,489,499	-	yhfG	b3362	0.14	+0.8
3,489,506	-	yhfG	b3362	0.18	-0.9
3,489,506	-	yhfG	b3362	0.18	-0.5
3,489,511	+	yhfG	b3362	0.21	+0.1
3,489,511	+	yhfG	b3362	0.21	-1.0
3,489,520	-	yhfG	b3362	0.27	-1.4
3,489,520	-	yhfG	b3362	0.27	-0.1
3,489,536	-	yhfG	b3362	0.36	+0.9
3,489,536	-	yhfG	b3362	0.36	+0.7
3,489,538	+	yhfG	b3362	0.38	-0.4
3,489,552	-	yhfG	b3362	0.46	+0.7
3,489,659	+				+2.1
3,489,659	-				+4.8
3,489,676	+				+1.3
3,489,700	+				-0.7
3,489,700	+				-4.0
3,489,743	-				+2.3
3,489,743	-				-4.6
3,489,753	-				-0.6
3,489,753	-				+0.6
3,489,804	-				-1.8
3,489,804	-				-5.1
3,489,804	-				+0.3
3,489,804	-				+1.2
3,489,806	+	ppiA	b3363	0.10	+1.4
3,489,806	+	ppiA	b3363	0.10	+0.6
3,489,820	-	ppiA	b3363	0.13	+2.6
3,489,820	-	ppiA	b3363	0.13	+1.3
3,489,849	+	ppiA	b3363	0.18	+2.2
3,489,849	+	ppiA	b3363	0.18	+0.8
3,489,849	+	ppiA	b3363	0.18	+1.3
3,489,857	-	ppiA	b3363	0.19	+1.6
3,489,866	-	ppiA	b3363	0.21	+0.9
3,489,866	-	ppiA	b3363	0.21	+0.6
3,489,878	-	ppiA	b3363	0.23	+1.6
3,489,878	-	ppiA	b3363	0.23	+0.5
3,489,905	+	ppiA	b3363	0.28	-0.4
3,489,905	+	ppiA	b3363	0.28	+0.9
3,489,914	-	ppiA	b3363	0.29	+1.6
3,489,916	-	ppiA	b3363	0.29	+1.4
3,489,916	-	ppiA	b3363	0.29	-1.7
3,489,967	-	ppiA	b3363	0.38	-0.9
3,489,967	-	ppiA	b3363	0.38	+1.5
3,489,989	+	ppiA	b3363	0.42	-2.7
3,489,997	-	ppiA	b3363	0.44	-0.2
3,489,997	-	ppiA	b3363	0.44	+1.1
3,490,055	+	ppiA	b3363	0.54	-0.8
3,490,115	-	ppiA	b3363	0.64	-0.4
3,490,120	+	ppiA	b3363	0.65	-0.0
3,490,120	+	ppiA	b3363	0.65	+0.2
3,490,188	-	ppiA	b3363	0.77	-0.3
3,490,201	+	ppiA	b3363	0.79	+0.3
3,490,226	-	ppiA	b3363	0.84	+0.5
3,490,261	+	ppiA	b3363	0.90	+2.5
3,490,267	+				+0.6
3,490,267	+				-5.0
3,490,269	+				+1.3
3,490,348	+				-3.9
3,490,348	+				+0.2
3,490,355	+				+1.3
3,490,367	+				-3.5
3,490,367	+				-4.4
3,490,377	+				+0.4
3,490,428	-				+1.0
3,490,555	-				-0.1
3,490,555	-				-5.4
3,490,590	-				+0.5
3,490,590	-				-1.4
3,490,598	+				+2.4
3,490,607	+				+0.8
3,490,607	+				+0.5
3,490,634	+				-0.5
3,490,636	+				+1.1
3,490,636	+				+0.4
3,490,644	-				-1.4
3,490,651	+				+0.7
3,490,661	-				+1.3
3,490,724	+	tsgA	b3364	0.11	+0.9
3,490,726	+	tsgA	b3364	0.12	-0.3
3,490,728	-	tsgA	b3364	0.12	+1.4
3,490,731	+	tsgA	b3364	0.12	-4.1
3,490,731	+	tsgA	b3364	0.12	+1.4
3,490,734	-	tsgA	b3364	0.12	-0.1
3,490,762	+	tsgA	b3364	0.15	-3.7
3,490,787	+	tsgA	b3364	0.17	-5.0
3,490,787	+	tsgA	b3364	0.17	-5.8
3,490,847	-	tsgA	b3364	0.22	+1.5
3,490,847	-	tsgA	b3364	0.22	+1.2
3,490,847	-	tsgA	b3364	0.22	-2.3
3,490,881	-	tsgA	b3364	0.25	+2.5
3,490,929	-	tsgA	b3364	0.29	-3.9
3,490,929	-	tsgA	b3364	0.29	-2.6
3,490,947	-	tsgA	b3364	0.30	+0.1
3,491,022	+	tsgA	b3364	0.37	-5.3
3,491,022	-	tsgA	b3364	0.37	+0.7
3,491,065	+	tsgA	b3364	0.40	+2.2
3,491,065	+	tsgA	b3364	0.40	+0.7
3,491,068	-	tsgA	b3364	0.40	-5.0
3,491,068	-	tsgA	b3364	0.40	-0.4
3,491,073	-	tsgA	b3364	0.41	+2.1
3,491,073	-	tsgA	b3364	0.41	+0.8
3,491,073	-	tsgA	b3364	0.41	+0.3
3,491,075	+	tsgA	b3364	0.41	+0.1
3,491,075	+	tsgA	b3364	0.41	+0.6
3,491,075	+	tsgA	b3364	0.41	+0.7
3,491,083	-	tsgA	b3364	0.42	+0.6
3,491,179	+	tsgA	b3364	0.50	+1.2
3,491,181	+	tsgA	b3364	0.50	-5.4
3,491,234	-	tsgA	b3364	0.54	-0.2
3,491,253	-	tsgA	b3364	0.56	-0.1
3,491,253	-	tsgA	b3364	0.56	-0.1
3,491,263	-	tsgA	b3364	0.57	-3.9
3,491,274	+	tsgA	b3364	0.58	+0.5
3,491,274	+	tsgA	b3364	0.58	-3.2
3,491,280	+	tsgA	b3364	0.58	-0.0
3,491,280	+	tsgA	b3364	0.58	+1.9
3,491,304	+	tsgA	b3364	0.60	-1.4
3,491,315	+	tsgA	b3364	0.61	-3.2