Experiment: Phage_N4_cage_3_mouse_3_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lrp and ftsK are separated by 134 nucleotides ftsK and lolA are separated by 158 nucleotides lolA and ycaJ are separated by 10 nucleotides
b0889: lrp - DNA-binding transcriptional dual regulator, leucine-binding (NCBI), at 931,818 to 932,312
lrp
b0890: ftsK - DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI), at 932,447 to 936,436
ftsK
b0891: lolA - chaperone for lipoproteins (RefSeq), at 936,595 to 937,206
lolA
b0892: ycaJ - recombination protein (NCBI), at 937,217 to 938,560
ycaJ
Position (kb) 932
933
934
935
936
937 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 931.641 kb on - strand at 931.641 kb on - strand at 931.721 kb on - strand at 931.764 kb on - strand at 931.764 kb on - strand at 931.801 kb on + strand at 931.856 kb on - strand at 931.864 kb on + strand at 931.937 kb on + strand, within lrp at 932.002 kb on - strand, within lrp at 932.002 kb on - strand, within lrp at 932.004 kb on - strand, within lrp at 932.066 kb on - strand, within lrp at 932.078 kb on + strand, within lrp at 932.331 kb on - strand at 932.331 kb on - strand at 932.353 kb on - strand at 932.385 kb on + strand at 932.385 kb on + strand at 932.385 kb on + strand at 932.430 kb on + strand at 932.430 kb on + strand at 932.614 kb on + strand at 933.053 kb on + strand, within ftsK at 933.095 kb on + strand, within ftsK at 933.102 kb on - strand, within ftsK at 933.104 kb on + strand, within ftsK at 933.511 kb on + strand, within ftsK at 933.511 kb on + strand, within ftsK at 933.528 kb on + strand, within ftsK at 933.537 kb on - strand, within ftsK at 933.567 kb on + strand, within ftsK at 933.619 kb on + strand, within ftsK at 933.637 kb on + strand, within ftsK at 933.637 kb on + strand, within ftsK at 933.703 kb on + strand, within ftsK at 933.703 kb on + strand, within ftsK at 933.724 kb on - strand, within ftsK at 933.790 kb on + strand, within ftsK at 933.792 kb on - strand, within ftsK at 934.122 kb on + strand, within ftsK at 934.187 kb on - strand, within ftsK at 934.205 kb on + strand, within ftsK at 934.436 kb on + strand, within ftsK at 934.444 kb on + strand, within ftsK at 934.701 kb on - strand, within ftsK at 934.721 kb on + strand, within ftsK at 934.812 kb on + strand, within ftsK at 934.813 kb on + strand, within ftsK at 934.911 kb on - strand, within ftsK at 934.953 kb on - strand, within ftsK at 935.020 kb on + strand, within ftsK at 935.047 kb on + strand, within ftsK at 935.075 kb on + strand, within ftsK at 935.100 kb on + strand, within ftsK at 935.180 kb on + strand, within ftsK at 935.470 kb on + strand, within ftsK at 935.473 kb on + strand, within ftsK at 935.593 kb on + strand, within ftsK at 935.593 kb on + strand, within ftsK at 935.615 kb on + strand, within ftsK at 935.664 kb on - strand, within ftsK at 935.905 kb on + strand, within ftsK at 936.012 kb on + strand, within ftsK at 936.022 kb on + strand, within ftsK at 936.045 kb on + strand at 936.058 kb on + strand at 936.068 kb on + strand at 936.326 kb on + strand at 936.464 kb on + strand at 936.561 kb on + strand at 937.209 kb on + strand at 937.258 kb on + strand at 937.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage_N4_cage_3_mouse_3_Cecum_40 hr remove 931,641 - +2.5 931,641 - +1.9 931,721 - +1.8 931,764 - +1.7 931,764 - +1.0 931,801 + -6.2 931,856 - +3.3 931,864 + +3.4 931,937 + lrp b0889 0.24 +3.1 932,002 - lrp b0889 0.37 +2.8 932,002 - lrp b0889 0.37 +3.2 932,004 - lrp b0889 0.38 +2.9 932,066 - lrp b0889 0.50 +3.7 932,078 + lrp b0889 0.53 +0.2 932,331 - +0.1 932,331 - +2.2 932,353 - -5.8 932,385 + -1.7 932,385 + -0.7 932,385 + -0.2 932,430 + -0.9 932,430 + +1.4 932,614 + -4.4 933,053 + ftsK b0890 0.15 -1.1 933,095 + ftsK b0890 0.16 -0.9 933,102 - ftsK b0890 0.16 -0.3 933,104 + ftsK b0890 0.16 -1.4 933,511 + ftsK b0890 0.27 -1.8 933,511 + ftsK b0890 0.27 -1.9 933,528 + ftsK b0890 0.27 -0.9 933,537 - ftsK b0890 0.27 -2.4 933,567 + ftsK b0890 0.28 -1.8 933,619 + ftsK b0890 0.29 -2.6 933,637 + ftsK b0890 0.30 -2.4 933,637 + ftsK b0890 0.30 -1.3 933,703 + ftsK b0890 0.31 -2.2 933,703 + ftsK b0890 0.31 -2.0 933,724 - ftsK b0890 0.32 -2.0 933,790 + ftsK b0890 0.34 -0.9 933,792 - ftsK b0890 0.34 -1.8 934,122 + ftsK b0890 0.42 -2.2 934,187 - ftsK b0890 0.44 -1.4 934,205 + ftsK b0890 0.44 -3.6 934,436 + ftsK b0890 0.50 -1.4 934,444 + ftsK b0890 0.50 -1.5 934,701 - ftsK b0890 0.56 -1.3 934,721 + ftsK b0890 0.57 -1.8 934,812 + ftsK b0890 0.59 -1.3 934,813 + ftsK b0890 0.59 -3.4 934,911 - ftsK b0890 0.62 -2.0 934,953 - ftsK b0890 0.63 -0.9 935,020 + ftsK b0890 0.64 -2.5 935,047 + ftsK b0890 0.65 -4.0 935,075 + ftsK b0890 0.66 -1.6 935,100 + ftsK b0890 0.66 -2.5 935,180 + ftsK b0890 0.68 -1.3 935,470 + ftsK b0890 0.76 -1.8 935,473 + ftsK b0890 0.76 -1.8 935,593 + ftsK b0890 0.79 -2.3 935,593 + ftsK b0890 0.79 -0.3 935,615 + ftsK b0890 0.79 -2.8 935,664 - ftsK b0890 0.81 -0.3 935,905 + ftsK b0890 0.87 -4.3 936,012 + ftsK b0890 0.89 -2.6 936,022 + ftsK b0890 0.90 -0.9 936,045 + -2.3 936,058 + -2.1 936,068 + -3.1 936,326 + -1.8 936,464 + +1.3 936,561 + +0.4 937,209 + +0.8 937,258 + -4.9 937,258 + +1.3
Or see this region's nucleotide sequence