Experiment: Phage_N4_cage_3_mouse_3_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgJ and yagV are separated by 312 nucleotides yagV and yagW overlap by 32 nucleotides yagW and yagX overlap by 11 nucleotides
b0288: ykgJ - predicted ferredoxin (NCBI), at 303,077 to 303,406
ykgJ
b0289: yagV - orf, hypothetical protein (VIMSS), at 303,719 to 304,429
yagV
b0290: yagW - predicted receptor (NCBI), at 304,398 to 306,041
yagW
b0291: yagX - predicted aromatic compound dioxygenase (NCBI), at 306,031 to 308,556
yagX
Position (kb) 304
305
306
307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 303.399 kb on - strand at 303.406 kb on + strand at 303.424 kb on - strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.454 kb on - strand at 303.454 kb on - strand at 303.463 kb on - strand at 303.592 kb on + strand at 303.592 kb on + strand at 303.599 kb on + strand at 303.599 kb on + strand at 303.616 kb on + strand at 303.724 kb on - strand at 303.724 kb on - strand at 303.803 kb on - strand, within yagV at 303.814 kb on - strand, within yagV at 303.814 kb on - strand, within yagV at 303.824 kb on - strand, within yagV at 303.933 kb on + strand, within yagV at 304.213 kb on + strand, within yagV at 304.308 kb on + strand, within yagV at 304.308 kb on + strand, within yagV at 304.369 kb on + strand at 304.369 kb on + strand at 304.395 kb on + strand at 304.617 kb on - strand, within yagW at 304.695 kb on + strand, within yagW at 304.707 kb on + strand, within yagW at 304.707 kb on + strand, within yagW at 304.717 kb on + strand, within yagW at 304.750 kb on + strand, within yagW at 304.825 kb on + strand, within yagW at 304.825 kb on + strand, within yagW at 304.869 kb on - strand, within yagW at 304.869 kb on - strand, within yagW at 305.031 kb on - strand, within yagW at 305.103 kb on - strand, within yagW at 305.136 kb on + strand, within yagW at 305.148 kb on + strand, within yagW at 305.148 kb on + strand, within yagW at 305.189 kb on + strand, within yagW at 305.189 kb on + strand, within yagW at 305.246 kb on + strand, within yagW at 305.454 kb on - strand, within yagW at 305.495 kb on - strand, within yagW at 305.495 kb on - strand, within yagW at 305.496 kb on + strand, within yagW at 305.510 kb on + strand, within yagW at 305.545 kb on + strand, within yagW at 305.545 kb on + strand, within yagW at 305.577 kb on + strand, within yagW at 305.676 kb on + strand, within yagW at 305.700 kb on + strand, within yagW at 305.708 kb on - strand, within yagW at 305.836 kb on - strand, within yagW at 305.836 kb on - strand, within yagW at 305.839 kb on + strand, within yagW at 306.000 kb on - strand at 306.069 kb on + strand at 306.069 kb on + strand at 306.086 kb on + strand at 306.094 kb on - strand at 306.251 kb on + strand at 306.457 kb on + strand, within yagX at 306.475 kb on - strand, within yagX at 306.526 kb on + strand, within yagX at 306.759 kb on - strand, within yagX at 306.777 kb on - strand, within yagX at 306.953 kb on - strand, within yagX at 307.033 kb on - strand, within yagX
Per-strain Table
Position Strand Gene LocusTag Fraction Phage_N4_cage_3_mouse_3_Cecum_40 hr remove 303,399 - +0.5 303,406 + +0.1 303,424 - +0.7 303,436 + +2.2 303,436 + +0.4 303,454 - -1.3 303,454 - +1.1 303,463 - +0.2 303,592 + +1.3 303,592 + +0.3 303,599 + +1.4 303,599 + -4.6 303,616 + -0.8 303,724 - +1.7 303,724 - +0.6 303,803 - yagV b0289 0.12 -0.2 303,814 - yagV b0289 0.13 -1.5 303,814 - yagV b0289 0.13 +0.7 303,824 - yagV b0289 0.15 -0.0 303,933 + yagV b0289 0.30 -0.7 304,213 + yagV b0289 0.69 +0.7 304,308 + yagV b0289 0.83 -4.7 304,308 + yagV b0289 0.83 +1.2 304,369 + +0.5 304,369 + -0.7 304,395 + +0.9 304,617 - yagW b0290 0.13 +1.6 304,695 + yagW b0290 0.18 +0.3 304,707 + yagW b0290 0.19 +2.0 304,707 + yagW b0290 0.19 +1.4 304,717 + yagW b0290 0.19 -0.1 304,750 + yagW b0290 0.21 -0.7 304,825 + yagW b0290 0.26 +1.3 304,825 + yagW b0290 0.26 +0.6 304,869 - yagW b0290 0.29 +0.3 304,869 - yagW b0290 0.29 +0.8 305,031 - yagW b0290 0.39 +1.2 305,103 - yagW b0290 0.43 +0.5 305,136 + yagW b0290 0.45 +0.4 305,148 + yagW b0290 0.46 -1.3 305,148 + yagW b0290 0.46 +0.5 305,189 + yagW b0290 0.48 +0.3 305,189 + yagW b0290 0.48 +1.2 305,246 + yagW b0290 0.52 +1.5 305,454 - yagW b0290 0.64 +0.6 305,495 - yagW b0290 0.67 +0.2 305,495 - yagW b0290 0.67 +0.8 305,496 + yagW b0290 0.67 +1.2 305,510 + yagW b0290 0.68 +0.9 305,545 + yagW b0290 0.70 +1.3 305,545 + yagW b0290 0.70 -1.5 305,577 + yagW b0290 0.72 +1.2 305,676 + yagW b0290 0.78 +0.3 305,700 + yagW b0290 0.79 +0.9 305,708 - yagW b0290 0.80 -3.2 305,836 - yagW b0290 0.87 -2.6 305,836 - yagW b0290 0.87 +1.7 305,839 + yagW b0290 0.88 +0.8 306,000 - +0.1 306,069 + +1.8 306,069 + -3.5 306,086 + +2.0 306,094 - +0.3 306,251 + -0.0 306,457 + yagX b0291 0.17 +0.0 306,475 - yagX b0291 0.18 -0.5 306,526 + yagX b0291 0.20 +1.7 306,759 - yagX b0291 0.29 +0.6 306,777 - yagX b0291 0.30 +1.3 306,953 - yagX b0291 0.37 -0.7 307,033 - yagX b0291 0.40 -0.3
Or see this region's nucleotide sequence