Experiment: Phage_N4_cage_3_mouse_2_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt insD-1 and yaiP are separated by 159 nucleotides yaiP and yaiS are separated by 123 nucleotides
b0361: insD-1 - IS2 insertion element transposase InsAB' (NCBI), at 380,898 to 381,803
insD-1
b0363: yaiP - predicted glucosyltransferase (NCBI), at 381,963 to 383,159
yaiP
b0364: yaiS - orf, hypothetical protein (VIMSS), at 383,283 to 383,840
yaiS
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 381.766 kb on + strand at 381.771 kb on + strand at 381.771 kb on + strand at 381.777 kb on + strand at 381.839 kb on + strand at 381.844 kb on + strand at 381.854 kb on + strand at 381.854 kb on + strand at 381.932 kb on + strand at 381.995 kb on - strand at 382.007 kb on - strand at 382.014 kb on - strand at 382.014 kb on - strand at 382.023 kb on - strand at 382.023 kb on - strand at 382.033 kb on + strand at 382.039 kb on - strand at 382.039 kb on - strand at 382.041 kb on - strand at 382.048 kb on + strand at 382.048 kb on + strand at 382.048 kb on + strand at 382.048 kb on + strand at 382.056 kb on - strand at 382.058 kb on + strand at 382.064 kb on - strand at 382.153 kb on - strand, within yaiP at 382.153 kb on - strand, within yaiP at 382.153 kb on - strand, within yaiP at 382.163 kb on + strand, within yaiP at 382.163 kb on + strand, within yaiP at 382.169 kb on - strand, within yaiP at 382.171 kb on + strand, within yaiP at 382.171 kb on + strand, within yaiP at 382.210 kb on + strand, within yaiP at 382.214 kb on - strand, within yaiP at 382.225 kb on + strand, within yaiP at 382.247 kb on - strand, within yaiP at 382.255 kb on - strand, within yaiP at 382.261 kb on + strand, within yaiP at 382.269 kb on - strand, within yaiP at 382.272 kb on - strand, within yaiP at 382.306 kb on + strand, within yaiP at 382.326 kb on - strand, within yaiP at 382.326 kb on - strand, within yaiP at 382.375 kb on - strand, within yaiP at 382.375 kb on - strand, within yaiP at 382.383 kb on + strand, within yaiP at 382.398 kb on + strand, within yaiP at 382.423 kb on - strand, within yaiP at 382.423 kb on - strand, within yaiP at 382.428 kb on - strand, within yaiP at 382.428 kb on - strand, within yaiP at 382.438 kb on - strand, within yaiP at 382.451 kb on + strand, within yaiP at 382.459 kb on - strand, within yaiP at 382.527 kb on + strand, within yaiP at 382.535 kb on - strand, within yaiP at 382.535 kb on - strand, within yaiP at 382.576 kb on + strand, within yaiP at 382.576 kb on + strand, within yaiP at 382.576 kb on + strand, within yaiP at 382.613 kb on + strand, within yaiP at 382.618 kb on + strand, within yaiP at 382.631 kb on + strand, within yaiP at 382.637 kb on - strand, within yaiP at 382.665 kb on + strand, within yaiP at 382.694 kb on - strand, within yaiP at 382.694 kb on - strand, within yaiP at 382.714 kb on + strand, within yaiP at 382.771 kb on - strand, within yaiP at 382.771 kb on - strand, within yaiP at 382.772 kb on - strand, within yaiP at 382.787 kb on - strand, within yaiP at 382.793 kb on + strand, within yaiP at 382.793 kb on + strand, within yaiP at 382.795 kb on + strand, within yaiP at 382.795 kb on + strand, within yaiP at 382.809 kb on - strand, within yaiP at 382.809 kb on - strand, within yaiP at 382.861 kb on + strand, within yaiP at 382.940 kb on + strand, within yaiP at 382.942 kb on + strand, within yaiP at 382.942 kb on + strand, within yaiP at 382.947 kb on + strand, within yaiP at 382.950 kb on + strand, within yaiP at 382.950 kb on + strand, within yaiP at 382.953 kb on - strand, within yaiP at 382.953 kb on - strand, within yaiP at 382.987 kb on + strand, within yaiP at 383.000 kb on + strand, within yaiP at 383.011 kb on + strand, within yaiP at 383.021 kb on + strand, within yaiP at 383.021 kb on + strand, within yaiP at 383.026 kb on + strand, within yaiP at 383.034 kb on - strand, within yaiP at 383.046 kb on - strand at 383.048 kb on - strand at 383.048 kb on - strand at 383.048 kb on - strand at 383.050 kb on + strand at 383.051 kb on + strand at 383.051 kb on + strand at 383.065 kb on + strand at 383.086 kb on + strand at 383.091 kb on + strand at 383.091 kb on + strand at 383.092 kb on + strand at 383.111 kb on + strand at 383.189 kb on + strand at 383.189 kb on + strand at 383.196 kb on + strand at 383.203 kb on + strand at 383.203 kb on + strand at 383.203 kb on + strand at 383.207 kb on + strand at 383.207 kb on + strand at 383.212 kb on + strand at 383.212 kb on + strand at 383.212 kb on + strand at 383.220 kb on - strand at 383.225 kb on - strand at 383.235 kb on + strand at 383.377 kb on + strand, within yaiS at 383.377 kb on + strand, within yaiS at 383.381 kb on + strand, within yaiS at 383.391 kb on + strand, within yaiS at 383.392 kb on - strand, within yaiS at 383.392 kb on - strand, within yaiS at 383.409 kb on + strand, within yaiS at 383.452 kb on + strand, within yaiS at 383.467 kb on + strand, within yaiS at 383.472 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.479 kb on + strand, within yaiS at 383.481 kb on - strand, within yaiS at 383.487 kb on - strand, within yaiS at 383.551 kb on + strand, within yaiS at 383.561 kb on + strand, within yaiS at 383.617 kb on - strand, within yaiS
Per-strain Table
Position Strand Gene LocusTag Fraction Phage_N4_cage_3_mouse_2_Cecum_40 hr remove 381,766 + +0.1 381,771 + -3.5 381,771 + -2.7 381,777 + +0.7 381,839 + +0.4 381,844 + +1.5 381,854 + +1.2 381,854 + -1.8 381,932 + +2.2 381,995 - +0.4 382,007 - -1.7 382,014 - -0.8 382,014 - -0.0 382,023 - +1.6 382,023 - +1.7 382,033 + -1.4 382,039 - +0.2 382,039 - -2.7 382,041 - +0.3 382,048 + -1.5 382,048 + +0.7 382,048 + +1.2 382,048 + +0.4 382,056 - +0.3 382,058 + -0.1 382,064 - +2.0 382,153 - yaiP b0363 0.16 +1.2 382,153 - yaiP b0363 0.16 +0.9 382,153 - yaiP b0363 0.16 -0.9 382,163 + yaiP b0363 0.17 +1.6 382,163 + yaiP b0363 0.17 -0.8 382,169 - yaiP b0363 0.17 +0.5 382,171 + yaiP b0363 0.17 +3.7 382,171 + yaiP b0363 0.17 +2.3 382,210 + yaiP b0363 0.21 +0.5 382,214 - yaiP b0363 0.21 +0.4 382,225 + yaiP b0363 0.22 +1.3 382,247 - yaiP b0363 0.24 -0.5 382,255 - yaiP b0363 0.24 +0.8 382,261 + yaiP b0363 0.25 +0.2 382,269 - yaiP b0363 0.26 +0.0 382,272 - yaiP b0363 0.26 +0.2 382,306 + yaiP b0363 0.29 -4.2 382,326 - yaiP b0363 0.30 +0.7 382,326 - yaiP b0363 0.30 +0.2 382,375 - yaiP b0363 0.34 +1.0 382,375 - yaiP b0363 0.34 -0.0 382,383 + yaiP b0363 0.35 +0.3 382,398 + yaiP b0363 0.36 -0.1 382,423 - yaiP b0363 0.38 +0.3 382,423 - yaiP b0363 0.38 -0.1 382,428 - yaiP b0363 0.39 +0.5 382,428 - yaiP b0363 0.39 +1.2 382,438 - yaiP b0363 0.40 +0.8 382,451 + yaiP b0363 0.41 +0.4 382,459 - yaiP b0363 0.41 -2.9 382,527 + yaiP b0363 0.47 +0.8 382,535 - yaiP b0363 0.48 +0.3 382,535 - yaiP b0363 0.48 -0.1 382,576 + yaiP b0363 0.51 +1.5 382,576 + yaiP b0363 0.51 +0.3 382,576 + yaiP b0363 0.51 +0.3 382,613 + yaiP b0363 0.54 +0.2 382,618 + yaiP b0363 0.55 +1.0 382,631 + yaiP b0363 0.56 +0.4 382,637 - yaiP b0363 0.56 -0.0 382,665 + yaiP b0363 0.59 +0.3 382,694 - yaiP b0363 0.61 -0.8 382,694 - yaiP b0363 0.61 -0.3 382,714 + yaiP b0363 0.63 +0.1 382,771 - yaiP b0363 0.68 +0.3 382,771 - yaiP b0363 0.68 +0.9 382,772 - yaiP b0363 0.68 -0.2 382,787 - yaiP b0363 0.69 -0.3 382,793 + yaiP b0363 0.69 +0.1 382,793 + yaiP b0363 0.69 +0.3 382,795 + yaiP b0363 0.70 -4.5 382,795 + yaiP b0363 0.70 +1.6 382,809 - yaiP b0363 0.71 +0.1 382,809 - yaiP b0363 0.71 -0.6 382,861 + yaiP b0363 0.75 -0.1 382,940 + yaiP b0363 0.82 -4.2 382,942 + yaiP b0363 0.82 -3.7 382,942 + yaiP b0363 0.82 -3.6 382,947 + yaiP b0363 0.82 +1.4 382,950 + yaiP b0363 0.82 -0.4 382,950 + yaiP b0363 0.82 +0.3 382,953 - yaiP b0363 0.83 +0.4 382,953 - yaiP b0363 0.83 -0.4 382,987 + yaiP b0363 0.86 -0.9 383,000 + yaiP b0363 0.87 +0.5 383,011 + yaiP b0363 0.88 +0.8 383,021 + yaiP b0363 0.88 -0.3 383,021 + yaiP b0363 0.88 +0.8 383,026 + yaiP b0363 0.89 -2.1 383,034 - yaiP b0363 0.89 -2.0 383,046 - +2.4 383,048 - +0.4 383,048 - -2.2 383,048 - -0.4 383,050 + +0.2 383,051 + +0.1 383,051 + -0.4 383,065 + -0.9 383,086 + +0.1 383,091 + +0.2 383,091 + -0.0 383,092 + -3.0 383,111 + +0.5 383,189 + +0.4 383,189 + -1.5 383,196 + -0.2 383,203 + -0.1 383,203 + +0.7 383,203 + -0.3 383,207 + +0.8 383,207 + +1.8 383,212 + +0.1 383,212 + -2.9 383,212 + -1.9 383,220 - +2.0 383,225 - +1.0 383,235 + +0.6 383,377 + yaiS b0364 0.17 -2.2 383,377 + yaiS b0364 0.17 +0.6 383,381 + yaiS b0364 0.18 +0.6 383,391 + yaiS b0364 0.19 -0.2 383,392 - yaiS b0364 0.20 +0.4 383,392 - yaiS b0364 0.20 -0.4 383,409 + yaiS b0364 0.23 +2.1 383,452 + yaiS b0364 0.30 +0.9 383,467 + yaiS b0364 0.33 -0.3 383,472 + yaiS b0364 0.34 +0.4 383,479 + yaiS b0364 0.35 +0.4 383,479 + yaiS b0364 0.35 -0.6 383,479 + yaiS b0364 0.35 +1.5 383,479 + yaiS b0364 0.35 -1.4 383,479 + yaiS b0364 0.35 -2.1 383,479 + yaiS b0364 0.35 +0.3 383,479 + yaiS b0364 0.35 -1.6 383,479 + yaiS b0364 0.35 +1.0 383,479 + yaiS b0364 0.35 -1.4 383,479 + yaiS b0364 0.35 -0.4 383,479 + yaiS b0364 0.35 -2.6 383,481 - yaiS b0364 0.35 +2.0 383,487 - yaiS b0364 0.37 +2.0 383,551 + yaiS b0364 0.48 -0.9 383,561 + yaiS b0364 0.50 -1.5 383,617 - yaiS b0364 0.60 +2.0
Or see this region's nucleotide sequence