Experiment: Phage_N4_cage_3_mouse_2_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araB and araC are separated by 338 nucleotides araC and yabI are separated by 85 nucleotides yabI and thiQ are separated by 113 nucleotides
b0063: araB - ribulokinase (NCBI), at 68,348 to 70,048
araB
b0064: araC - DNA-binding transcriptional dual regulator (NCBI), at 70,387 to 71,265
araC
b0065: yabI - conserved inner membrane protein (NCBI), at 71,351 to 72,115
yabI
b0066: thiQ - thiamin transporter subunit (NCBI), at 72,229 to 72,927
thiQ
Position (kb) 70
71
72 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 70.251 kb on + strand at 70.251 kb on + strand at 70.308 kb on + strand at 70.634 kb on + strand, within araC at 70.634 kb on + strand, within araC at 70.637 kb on - strand, within araC at 70.713 kb on - strand, within araC at 70.755 kb on - strand, within araC at 70.809 kb on + strand, within araC at 70.809 kb on + strand, within araC at 70.815 kb on - strand, within araC at 70.829 kb on - strand, within araC at 70.834 kb on - strand, within araC at 70.834 kb on - strand, within araC at 70.874 kb on + strand, within araC at 70.885 kb on + strand, within araC at 70.949 kb on - strand, within araC at 71.118 kb on - strand, within araC at 71.118 kb on - strand, within araC at 71.119 kb on + strand, within araC at 71.168 kb on - strand, within araC at 71.240 kb on + strand at 71.303 kb on + strand at 71.303 kb on + strand at 71.307 kb on - strand at 71.307 kb on - strand at 71.345 kb on + strand at 71.421 kb on - strand at 71.431 kb on - strand, within yabI at 71.431 kb on - strand, within yabI at 71.448 kb on + strand, within yabI at 71.448 kb on + strand, within yabI at 71.466 kb on - strand, within yabI at 71.466 kb on - strand, within yabI at 71.592 kb on + strand, within yabI at 71.654 kb on + strand, within yabI at 71.723 kb on - strand, within yabI at 71.723 kb on - strand, within yabI at 71.745 kb on - strand, within yabI at 71.910 kb on + strand, within yabI at 71.976 kb on - strand, within yabI at 72.058 kb on - strand at 72.058 kb on - strand at 72.077 kb on + strand at 72.081 kb on + strand at 72.081 kb on + strand at 72.116 kb on - strand at 72.117 kb on + strand at 72.117 kb on + strand at 72.118 kb on - strand at 72.159 kb on - strand at 72.181 kb on + strand at 72.203 kb on - strand at 72.212 kb on + strand at 72.212 kb on + strand at 72.239 kb on + strand at 72.239 kb on + strand at 72.247 kb on - strand at 72.249 kb on + strand at 72.249 kb on + strand at 72.249 kb on + strand at 72.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phage_N4_cage_3_mouse_2_Cecum_40 hr remove 70,251 + -1.2 70,251 + +0.0 70,308 + +0.7 70,634 + araC b0064 0.28 +2.2 70,634 + araC b0064 0.28 +3.6 70,637 - araC b0064 0.28 +0.9 70,713 - araC b0064 0.37 +2.7 70,755 - araC b0064 0.42 +1.7 70,809 + araC b0064 0.48 +2.8 70,809 + araC b0064 0.48 +2.7 70,815 - araC b0064 0.49 +0.8 70,829 - araC b0064 0.50 +1.8 70,834 - araC b0064 0.51 +2.1 70,834 - araC b0064 0.51 +2.4 70,874 + araC b0064 0.55 +2.1 70,885 + araC b0064 0.57 +2.7 70,949 - araC b0064 0.64 +1.7 71,118 - araC b0064 0.83 +1.0 71,118 - araC b0064 0.83 +2.2 71,119 + araC b0064 0.83 +3.1 71,168 - araC b0064 0.89 +2.5 71,240 + -0.2 71,303 + -0.8 71,303 + +0.5 71,307 - -0.2 71,307 - +0.3 71,345 + +0.1 71,421 - -2.1 71,431 - yabI b0065 0.10 -0.3 71,431 - yabI b0065 0.10 -0.7 71,448 + yabI b0065 0.13 -2.0 71,448 + yabI b0065 0.13 -0.4 71,466 - yabI b0065 0.15 -0.0 71,466 - yabI b0065 0.15 -0.3 71,592 + yabI b0065 0.32 +0.3 71,654 + yabI b0065 0.40 -0.8 71,723 - yabI b0065 0.49 -3.6 71,723 - yabI b0065 0.49 +0.8 71,745 - yabI b0065 0.52 +0.2 71,910 + yabI b0065 0.73 -1.6 71,976 - yabI b0065 0.82 -3.1 72,058 - +1.8 72,058 - -0.2 72,077 + +0.9 72,081 + +0.6 72,081 + -0.1 72,116 - -0.4 72,117 + -0.4 72,117 + +0.7 72,118 - +0.2 72,159 - -0.5 72,181 + -4.7 72,203 - +0.8 72,212 + +1.9 72,212 + -2.8 72,239 + -0.2 72,239 + -0.1 72,247 - -0.1 72,249 + -0.1 72,249 + +0.0 72,249 + -0.7 72,257 + -1.7
Or see this region's nucleotide sequence