Strain Fitness in Escherichia coli BW25113 around b2040

Experiment: PBS_cage_2_mouse_3_Cecum_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_2_mouse_3_Cecum_40 hr
2,108,128	-				-4.3
2,108,286	-	rfbA	b2039	0.14	+1.4
2,108,286	-	rfbA	b2039	0.14	+0.1
2,108,294	-	rfbA	b2039	0.15	+1.7
2,108,300	-	rfbA	b2039	0.16	-0.6
2,108,309	-	rfbA	b2039	0.17	-0.0
2,108,309	-	rfbA	b2039	0.17	+0.2
2,108,317	-	rfbA	b2039	0.18	-0.8
2,108,317	-	rfbA	b2039	0.18	+0.5
2,108,345	-	rfbA	b2039	0.21	+3.2
2,108,345	-	rfbA	b2039	0.21	+0.7
2,108,349	-	rfbA	b2039	0.21	+0.0
2,108,349	-	rfbA	b2039	0.21	+0.3
2,108,361	-	rfbA	b2039	0.23	-0.6
2,108,361	-	rfbA	b2039	0.23	-0.1
2,108,364	+	rfbA	b2039	0.23	+2.3
2,108,366	-	rfbA	b2039	0.23	-0.4
2,108,366	-	rfbA	b2039	0.23	+1.4
2,108,366	-	rfbA	b2039	0.23	-0.9
2,108,383	-	rfbA	b2039	0.25	-0.4
2,108,383	-	rfbA	b2039	0.25	+0.4
2,108,383	-	rfbA	b2039	0.25	+0.2
2,108,395	-	rfbA	b2039	0.26	-0.5
2,108,395	-	rfbA	b2039	0.26	+1.5
2,108,397	-	rfbA	b2039	0.27	-1.0
2,108,397	-	rfbA	b2039	0.27	+4.1
2,108,429	-	rfbA	b2039	0.30	-3.0
2,108,459	-	rfbA	b2039	0.34	-0.1
2,108,463	-	rfbA	b2039	0.34	+1.4
2,108,478	-	rfbA	b2039	0.36	+0.4
2,108,485	-	rfbA	b2039	0.37	+0.1
2,108,494	-	rfbA	b2039	0.38	+0.8
2,108,494	-	rfbA	b2039	0.38	+0.2
2,108,521	+	rfbA	b2039	0.41	+2.3
2,108,521	-	rfbA	b2039	0.41	+1.4
2,108,529	-	rfbA	b2039	0.42	+0.1
2,108,564	-	rfbA	b2039	0.46	-0.5
2,108,564	-	rfbA	b2039	0.46	-0.6
2,108,568	-	rfbA	b2039	0.46	+0.4
2,108,604	+	rfbA	b2039	0.50	-1.6
2,108,610	-	rfbA	b2039	0.51	-0.2
2,108,612	-	rfbA	b2039	0.51	-0.3
2,108,629	-	rfbA	b2039	0.53	+3.5
2,108,641	-	rfbA	b2039	0.54	-0.1
2,108,641	-	rfbA	b2039	0.54	-0.2
2,108,674	+	rfbA	b2039	0.58	+2.3
2,108,682	-	rfbA	b2039	0.59	+1.6
2,108,682	-	rfbA	b2039	0.59	-0.4
2,108,682	-	rfbA	b2039	0.59	-0.6
2,108,682	-	rfbA	b2039	0.59	+0.1
2,108,718	-	rfbA	b2039	0.63	+0.2
2,108,728	-	rfbA	b2039	0.64	-0.3
2,108,728	-	rfbA	b2039	0.64	-0.7
2,108,732	+	rfbA	b2039	0.65	-0.0
2,108,734	+	rfbA	b2039	0.65	+1.3
2,108,771	-	rfbA	b2039	0.69	-0.3
2,108,790	-	rfbA	b2039	0.71	-2.2
2,108,795	-	rfbA	b2039	0.72	-0.5
2,108,807	-	rfbA	b2039	0.73	+0.2
2,108,812	+	rfbA	b2039	0.74	-1.4
2,108,814	-	rfbA	b2039	0.74	+1.0
2,108,815	-	rfbA	b2039	0.74	+0.9
2,108,815	-	rfbA	b2039	0.74	-0.1
2,108,828	-	rfbA	b2039	0.76	+1.0
2,108,828	-	rfbA	b2039	0.76	-1.1
2,108,830	-	rfbA	b2039	0.76	-0.2
2,108,832	-	rfbA	b2039	0.76	-0.2
2,108,834	-	rfbA	b2039	0.76	-2.7
2,108,835	-	rfbA	b2039	0.76	-0.2
2,108,835	-	rfbA	b2039	0.76	-0.8
2,108,835	-	rfbA	b2039	0.76	-0.3
2,108,835	-	rfbA	b2039	0.76	+0.3
2,108,835	-	rfbA	b2039	0.76	+0.1
2,108,853	-	rfbA	b2039	0.78	-0.6
2,108,864	+	rfbA	b2039	0.80	-2.6
2,108,864	+	rfbA	b2039	0.80	+1.4
2,108,864	+	rfbA	b2039	0.80	-3.5
2,108,864	+	rfbA	b2039	0.80	+0.7
2,108,870	-	rfbA	b2039	0.80	+0.6
2,108,870	-	rfbA	b2039	0.80	+1.1
2,108,874	+	rfbA	b2039	0.81	+0.8
2,108,874	+	rfbA	b2039	0.81	-0.3
2,108,913	+	rfbA	b2039	0.85	+0.7
2,108,913	+	rfbA	b2039	0.85	+1.3
2,108,922	-	rfbA	b2039	0.86	-3.8
2,108,922	-	rfbA	b2039	0.86	-0.1
2,108,924	-	rfbA	b2039	0.86	-0.1
2,108,924	-	rfbA	b2039	0.86	+0.8
2,108,926	+	rfbA	b2039	0.87	+2.3
2,108,953	-	rfbA	b2039	0.90	-1.9
2,108,956	-				+0.4
2,108,957	-				+0.6
2,108,973	-				+0.9
2,108,977	-				+1.3
2,108,977	-				-1.1
2,108,982	-				+0.3
2,108,982	-				+2.1
2,108,996	-				+1.1
2,108,996	-				+0.3
2,108,996	-				+0.5
2,108,996	-				-1.3
2,108,998	-				+0.4
2,109,009	-				-0.2
2,109,076	-				+1.3
2,109,148	-				-3.2
2,109,148	-				-0.5
2,109,148	-				-0.0
2,109,159	-				-4.1
2,109,159	-				-0.2
2,109,166	-				-3.2
2,109,234	+	rfbD	b2040	0.15	+0.7
2,109,236	+	rfbD	b2040	0.15	+0.7
2,109,239	-				-1.5
2,109,239	-	rfbD	b2040	0.15	-0.8
2,109,240	-	rfbD	b2040	0.15	-3.0
2,109,253	+	rfbD	b2040	0.17	+1.3
2,109,253	+	rfbD	b2040	0.17	+2.3
2,109,254	-	rfbD	b2040	0.17	-2.2
2,109,266	-	rfbD	b2040	0.18	-0.7
2,109,272	-	rfbD	b2040	0.19	-2.0
2,109,274	+	rfbD	b2040	0.19	-0.5
2,109,299	-	rfbD	b2040	0.22	-2.6
2,109,299	-	rfbD	b2040	0.22	-1.6
2,109,329	-	rfbD	b2040	0.25	-1.5
2,109,329	-	rfbD	b2040	0.25	-2.5
2,109,329	-	rfbD	b2040	0.25	-0.8
2,109,336	+	rfbD	b2040	0.26	-1.2
2,109,344	-	rfbD	b2040	0.27	+0.2
2,109,353	-	rfbD	b2040	0.28	-0.7
2,109,360	-	rfbD	b2040	0.29	-1.7
2,109,362	+	rfbD	b2040	0.29	-2.4
2,109,362	+	rfbD	b2040	0.29	+0.7
2,109,370	-	rfbD	b2040	0.30	-2.1
2,109,370	-	rfbD	b2040	0.30	-0.8
2,109,370	-	rfbD	b2040	0.30	-2.2
2,109,370	-	rfbD	b2040	0.30	-1.7
2,109,370	-	rfbD	b2040	0.30	+1.0
2,109,375	-	rfbD	b2040	0.30	-3.0
2,109,409	+	rfbD	b2040	0.34	-0.7
2,109,412	-	rfbD	b2040	0.35	-4.9
2,109,412	-	rfbD	b2040	0.35	+0.5
2,109,412	-	rfbD	b2040	0.35	-4.0
2,109,412	-	rfbD	b2040	0.35	-2.0
2,109,421	+	rfbD	b2040	0.36	-0.3
2,109,430	+	rfbD	b2040	0.37	-2.5
2,109,438	-	rfbD	b2040	0.37	-4.2
2,109,438	-	rfbD	b2040	0.37	-0.6
2,109,521	+	rfbD	b2040	0.47	-2.9
2,109,521	+	rfbD	b2040	0.47	+2.3
2,109,653	-	rfbD	b2040	0.61	-0.3
2,109,653	-	rfbD	b2040	0.61	-0.5
2,109,653	-	rfbD	b2040	0.61	-3.6
2,109,698	-	rfbD	b2040	0.66	-4.1
2,109,726	-	rfbD	b2040	0.69	-1.9
2,109,742	+	rfbD	b2040	0.71	-1.7
2,109,742	+	rfbD	b2040	0.71	-1.2
2,109,742	+	rfbD	b2040	0.71	-3.4
2,109,767	-	rfbD	b2040	0.74	-1.6
2,109,797	+	rfbD	b2040	0.77	-0.0
2,109,797	+	rfbD	b2040	0.77	+0.7
2,109,805	-	rfbD	b2040	0.78	-2.6
2,109,805	-	rfbD	b2040	0.78	-0.9
2,109,805	-	rfbD	b2040	0.78	-0.3
2,109,805	-	rfbD	b2040	0.78	-0.1
2,109,805	-	rfbD	b2040	0.78	-1.8
2,109,815	-	rfbD	b2040	0.79	-5.0
2,109,815	-	rfbD	b2040	0.79	-2.4
2,109,861	+	rfbD	b2040	0.84	+2.3
2,109,908	-	rfbD	b2040	0.90	-1.6
2,109,936	+				-0.7
2,109,936	+				+1.3
2,109,943	+				+0.3
2,109,945	+				-0.7
2,109,945	-				-4.9
2,109,947	+				-1.7
2,109,958	-				-0.9
2,109,958	-				-2.2
2,109,958	-				-3.3
2,109,960	-				-4.9
2,109,963	-				-1.1
2,109,963	-				-2.5
2,109,963	-				-1.0
2,109,963	-				-1.1
2,109,965	+				-1.2
2,109,965	-				-1.8
2,109,995	+				-2.6
2,110,018	-				-0.6
2,110,036	-				-0.5
2,110,059	-				+0.8
2,110,087	-				+0.5
2,110,087	-				-0.1
2,110,087	-				+0.3
2,110,124	-	rfbB	b2041	0.11	+0.1
2,110,124	-	rfbB	b2041	0.11	+2.0
2,110,125	+	rfbB	b2041	0.12	-0.5
2,110,125	+	rfbB	b2041	0.12	-1.9
2,110,139	-	rfbB	b2041	0.13	-1.1
2,110,152	-	rfbB	b2041	0.14	-1.2
2,110,172	+	rfbB	b2041	0.16	-0.1
2,110,172	+	rfbB	b2041	0.16	+0.4
2,110,172	-	rfbB	b2041	0.16	+1.3
2,110,173	-	rfbB	b2041	0.16	+0.4
2,110,173	-	rfbB	b2041	0.16	+0.1
2,110,173	-	rfbB	b2041	0.16	+0.3
2,110,196	+	rfbB	b2041	0.18	-2.9
2,110,196	+	rfbB	b2041	0.18	+0.6
2,110,206	-	rfbB	b2041	0.19	-0.1
2,110,206	-	rfbB	b2041	0.19	+1.0
2,110,213	-	rfbB	b2041	0.20	-0.0
2,110,246	+	rfbB	b2041	0.23	-0.6
2,110,246	+	rfbB	b2041	0.23	+0.2
2,110,258	-	rfbB	b2041	0.24	+0.9
2,110,258	-	rfbB	b2041	0.24	+1.7
2,110,275	+	rfbB	b2041	0.25	+1.0
2,110,275	+	rfbB	b2041	0.25	-2.1
2,110,275	+	rfbB	b2041	0.25	-0.2
2,110,278	+	rfbB	b2041	0.26	-2.0
2,110,279	-	rfbB	b2041	0.26	-0.3
2,110,281	-	rfbB	b2041	0.26	+0.2
2,110,305	+	rfbB	b2041	0.28	+0.2
2,110,305	+	rfbB	b2041	0.28	+0.3
2,110,316	-	rfbB	b2041	0.29	-0.2
2,110,316	-	rfbB	b2041	0.29	+1.3
2,110,332	+	rfbB	b2041	0.31	+1.2
2,110,352	+	rfbB	b2041	0.32	-0.0
2,110,352	+	rfbB	b2041	0.32	-1.7
2,110,352	+	rfbB	b2041	0.32	-1.5
2,110,354	+	rfbB	b2041	0.33	+2.6
2,110,357	-	rfbB	b2041	0.33	+0.2
2,110,360	-	rfbB	b2041	0.33	+0.3
2,110,362	-	rfbB	b2041	0.33	+0.7
2,110,362	-	rfbB	b2041	0.33	-1.5
2,110,362	-	rfbB	b2041	0.33	-2.6
2,110,362	-	rfbB	b2041	0.33	+0.2
2,110,362	-	rfbB	b2041	0.33	+0.4
2,110,372	+	rfbB	b2041	0.34	+0.9
2,110,372	+	rfbB	b2041	0.34	+1.0
2,110,372	-	rfbB	b2041	0.34	-0.0
2,110,374	+	rfbB	b2041	0.34	+2.0
2,110,379	+	rfbB	b2041	0.35	-2.0
2,110,379	+	rfbB	b2041	0.35	-1.3
2,110,379	+	rfbB	b2041	0.35	+2.0
2,110,380	+	rfbB	b2041	0.35	-1.5
2,110,380	+	rfbB	b2041	0.35	-3.2
2,110,384	-	rfbB	b2041	0.35	-2.3
2,110,384	-	rfbB	b2041	0.35	+0.2
2,110,387	-	rfbB	b2041	0.36	-0.4
2,110,387	-	rfbB	b2041	0.36	-0.0
2,110,387	-	rfbB	b2041	0.36	-0.2
2,110,393	-	rfbB	b2041	0.36	+0.2
2,110,398	+	rfbB	b2041	0.37	+1.3
2,110,414	-	rfbB	b2041	0.38	+0.4
2,110,420	+	rfbB	b2041	0.39	-0.2
2,110,434	+	rfbB	b2041	0.40	+0.9
2,110,435	+	rfbB	b2041	0.40	-1.7
2,110,496	-	rfbB	b2041	0.46	+1.2
2,110,496	-	rfbB	b2041	0.46	+1.9
2,110,533	+	rfbB	b2041	0.49	+0.3
2,110,538	-	rfbB	b2041	0.50	+0.4
2,110,556	+	rfbB	b2041	0.51	-1.0
2,110,565	+	rfbB	b2041	0.52	-3.8
2,110,565	+	rfbB	b2041	0.52	-1.7
2,110,583	+	rfbB	b2041	0.54	-0.3
2,110,586	-	rfbB	b2041	0.54	+0.3
2,110,591	-	rfbB	b2041	0.54	+0.0
2,110,602	-	rfbB	b2041	0.55	+0.0
2,110,608	-	rfbB	b2041	0.56	-0.5
2,110,608	-	rfbB	b2041	0.56	-0.6
2,110,654	+	rfbB	b2041	0.60	-1.0
2,110,658	+	rfbB	b2041	0.61	+1.7
2,110,668	+	rfbB	b2041	0.62	-1.3
2,110,673	+	rfbB	b2041	0.62	-2.4
2,110,676	-	rfbB	b2041	0.62	+0.1
2,110,676	-	rfbB	b2041	0.62	+0.3
2,110,678	+	rfbB	b2041	0.62	+0.4
2,110,678	+	rfbB	b2041	0.62	-2.7
2,110,680	-	rfbB	b2041	0.63	-0.9
2,110,681	-	rfbB	b2041	0.63	-0.1
2,110,681	-	rfbB	b2041	0.63	+0.2
2,110,737	-	rfbB	b2041	0.68	-3.5
2,110,738	+	rfbB	b2041	0.68	+0.1
2,110,739	-	rfbB	b2041	0.68	+0.5
2,110,765	-	rfbB	b2041	0.70	+0.0
2,110,810	+	rfbB	b2041	0.75	-0.8
2,110,829	+	rfbB	b2041	0.76	-2.0
2,110,833	-	rfbB	b2041	0.77	+0.8
2,110,837	-	rfbB	b2041	0.77	+0.4
2,110,842	+	rfbB	b2041	0.78	+2.8
2,110,851	-	rfbB	b2041	0.78	+0.7
2,110,852	-	rfbB	b2041	0.78	+3.0
2,110,852	-	rfbB	b2041	0.78	-0.9
2,110,865	-	rfbB	b2041	0.80	-1.6
2,110,867	-	rfbB	b2041	0.80	+2.4
2,110,867	-	rfbB	b2041	0.80	+0.3
2,110,867	-	rfbB	b2041	0.80	+1.4
2,110,867	-	rfbB	b2041	0.80	+0.1
2,110,873	-	rfbB	b2041	0.80	+0.6
2,110,873	-	rfbB	b2041	0.80	-1.9
2,110,892	+	rfbB	b2041	0.82	+0.3
2,110,950	-	rfbB	b2041	0.87	+1.1
2,110,959	+	rfbB	b2041	0.88	+0.3
2,110,959	+	rfbB	b2041	0.88	-0.7
2,110,970	-	rfbB	b2041	0.89	-0.6