Experiment: PBS_cage_2_mouse_3_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybgO and ybgP overlap by 4 nucleotides ybgP and ybgQ are separated by 14 nucleotides ybgQ and ybgD are separated by 59 nucleotides
b0716: ybgO - orf, hypothetical protein (VIMSS), at 747,144 to 748,205
ybgO
b0717: ybgP - predicted assembly protein (NCBI), at 748,202 to 748,930
ybgP
b0718: ybgQ - putative outer membrane protein (VIMSS), at 748,945 to 751,392
ybgQ
b0719: ybgD - predicted fimbrial-like adhesin protein (NCBI), at 751,452 to 752,018
ybgD
Position (kb) 748
749
750
751
752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 747.957 kb on + strand, within ybgO at 747.957 kb on + strand, within ybgO at 747.957 kb on + strand, within ybgO at 747.958 kb on + strand, within ybgO at 747.960 kb on - strand, within ybgO at 748.262 kb on - strand at 748.367 kb on - strand, within ybgP at 748.367 kb on - strand, within ybgP at 748.471 kb on + strand, within ybgP at 748.526 kb on - strand, within ybgP at 748.550 kb on + strand, within ybgP at 748.550 kb on + strand, within ybgP at 748.569 kb on - strand, within ybgP at 748.606 kb on + strand, within ybgP at 748.606 kb on + strand, within ybgP at 748.651 kb on - strand, within ybgP at 748.668 kb on + strand, within ybgP at 748.792 kb on - strand, within ybgP at 748.954 kb on + strand at 748.954 kb on + strand at 749.016 kb on + strand at 749.016 kb on + strand at 749.021 kb on + strand at 749.029 kb on - strand at 749.097 kb on + strand at 749.143 kb on + strand at 749.143 kb on + strand at 749.259 kb on + strand, within ybgQ at 749.278 kb on - strand, within ybgQ at 749.278 kb on - strand, within ybgQ at 749.300 kb on + strand, within ybgQ at 749.307 kb on + strand, within ybgQ at 749.307 kb on + strand, within ybgQ at 749.308 kb on - strand, within ybgQ at 749.308 kb on - strand, within ybgQ at 749.363 kb on + strand, within ybgQ at 749.511 kb on - strand, within ybgQ at 749.511 kb on - strand, within ybgQ at 749.562 kb on + strand, within ybgQ at 749.593 kb on - strand, within ybgQ at 749.680 kb on - strand, within ybgQ at 749.695 kb on - strand, within ybgQ at 749.706 kb on - strand, within ybgQ at 749.764 kb on + strand, within ybgQ at 749.764 kb on + strand, within ybgQ at 749.805 kb on - strand, within ybgQ at 749.861 kb on + strand, within ybgQ at 749.861 kb on + strand, within ybgQ at 749.912 kb on + strand, within ybgQ at 749.929 kb on + strand, within ybgQ at 749.929 kb on + strand, within ybgQ at 750.124 kb on + strand, within ybgQ at 750.129 kb on + strand, within ybgQ at 750.160 kb on - strand, within ybgQ at 750.263 kb on - strand, within ybgQ at 750.273 kb on - strand, within ybgQ at 750.273 kb on - strand, within ybgQ at 750.374 kb on - strand, within ybgQ at 750.374 kb on - strand, within ybgQ at 750.432 kb on + strand, within ybgQ at 750.461 kb on - strand, within ybgQ at 750.471 kb on - strand, within ybgQ at 750.477 kb on + strand, within ybgQ at 750.570 kb on + strand, within ybgQ at 750.573 kb on - strand, within ybgQ at 750.604 kb on - strand, within ybgQ at 750.640 kb on - strand, within ybgQ at 750.706 kb on - strand, within ybgQ at 750.706 kb on - strand, within ybgQ at 750.743 kb on - strand, within ybgQ at 750.807 kb on - strand, within ybgQ at 750.847 kb on + strand, within ybgQ at 750.847 kb on + strand, within ybgQ at 750.853 kb on - strand, within ybgQ at 750.869 kb on - strand, within ybgQ at 750.869 kb on - strand, within ybgQ at 750.874 kb on + strand, within ybgQ at 750.879 kb on - strand, within ybgQ at 750.882 kb on + strand, within ybgQ at 750.932 kb on - strand, within ybgQ at 750.948 kb on + strand, within ybgQ at 750.958 kb on - strand, within ybgQ at 750.958 kb on - strand, within ybgQ at 750.971 kb on + strand, within ybgQ at 750.986 kb on + strand, within ybgQ at 750.991 kb on + strand, within ybgQ at 751.065 kb on + strand, within ybgQ at 751.074 kb on + strand, within ybgQ at 751.077 kb on + strand, within ybgQ at 751.078 kb on + strand, within ybgQ at 751.078 kb on + strand, within ybgQ at 751.078 kb on + strand, within ybgQ at 751.088 kb on + strand, within ybgQ at 751.088 kb on + strand, within ybgQ at 751.093 kb on + strand, within ybgQ at 751.102 kb on + strand, within ybgQ at 751.134 kb on + strand, within ybgQ at 751.156 kb on + strand at 751.202 kb on + strand at 751.337 kb on + strand at 751.342 kb on + strand at 751.348 kb on + strand at 751.348 kb on + strand at 751.349 kb on + strand at 751.349 kb on + strand at 751.357 kb on - strand at 751.357 kb on - strand at 751.358 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.396 kb on + strand at 751.396 kb on + strand at 751.404 kb on - strand at 751.463 kb on - strand at 751.479 kb on - strand at 751.490 kb on - strand at 751.495 kb on - strand at 751.497 kb on - strand at 751.524 kb on - strand, within ybgD at 751.526 kb on - strand, within ybgD at 751.548 kb on - strand, within ybgD at 751.559 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.585 kb on - strand, within ybgD at 751.594 kb on + strand, within ybgD at 751.607 kb on - strand, within ybgD at 751.607 kb on - strand, within ybgD at 751.611 kb on - strand, within ybgD at 751.634 kb on + strand, within ybgD at 751.634 kb on + strand, within ybgD at 751.637 kb on - strand, within ybgD at 751.640 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.644 kb on + strand, within ybgD at 751.644 kb on + strand, within ybgD at 751.666 kb on - strand, within ybgD at 751.666 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.693 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.712 kb on + strand, within ybgD at 751.712 kb on + strand, within ybgD at 751.721 kb on - strand, within ybgD at 751.750 kb on - strand, within ybgD at 751.757 kb on + strand, within ybgD at 751.757 kb on + strand, within ybgD at 751.772 kb on + strand, within ybgD at 751.791 kb on + strand, within ybgD at 751.791 kb on + strand, within ybgD at 751.794 kb on + strand, within ybgD at 751.794 kb on + strand, within ybgD at 751.805 kb on + strand, within ybgD at 751.813 kb on + strand, within ybgD at 751.827 kb on + strand, within ybgD at 751.829 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.850 kb on + strand, within ybgD at 751.909 kb on + strand, within ybgD at 751.915 kb on + strand, within ybgD at 751.915 kb on + strand, within ybgD at 751.938 kb on + strand, within ybgD at 751.938 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.952 kb on + strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.966 kb on + strand at 751.966 kb on + strand at 751.966 kb on + strand at 751.966 kb on + strand at 751.968 kb on + strand at 751.968 kb on + strand at 751.968 kb on + strand at 751.976 kb on + strand at 751.976 kb on - strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.981 kb on - strand at 751.981 kb on - strand at 751.983 kb on + strand at 752.008 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.034 kb on + strand at 752.034 kb on + strand at 752.034 kb on + strand at 752.035 kb on + strand at 752.036 kb on + strand at 752.041 kb on + strand at 752.041 kb on + strand at 752.041 kb on + strand at 752.192 kb on - strand at 752.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_2_mouse_3_Cecum_40 hr remove 747,957 + ybgO b0716 0.77 -0.2 747,957 + ybgO b0716 0.77 -0.9 747,957 + ybgO b0716 0.77 -0.5 747,958 + ybgO b0716 0.77 +0.7 747,960 - ybgO b0716 0.77 -2.7 748,262 - -0.5 748,367 - ybgP b0717 0.23 -1.5 748,367 - ybgP b0717 0.23 +1.2 748,471 + ybgP b0717 0.37 -0.6 748,526 - ybgP b0717 0.44 -0.2 748,550 + ybgP b0717 0.48 +0.3 748,550 + ybgP b0717 0.48 -1.0 748,569 - ybgP b0717 0.50 +0.1 748,606 + ybgP b0717 0.55 -3.4 748,606 + ybgP b0717 0.55 -2.0 748,651 - ybgP b0717 0.62 -0.7 748,668 + ybgP b0717 0.64 +1.2 748,792 - ybgP b0717 0.81 +2.4 748,954 + +0.8 748,954 + +0.5 749,016 + +0.8 749,016 + -0.4 749,021 + -0.8 749,029 - +1.2 749,097 + -0.2 749,143 + -1.7 749,143 + +1.2 749,259 + ybgQ b0718 0.13 +1.4 749,278 - ybgQ b0718 0.14 +2.9 749,278 - ybgQ b0718 0.14 -1.2 749,300 + ybgQ b0718 0.15 +0.2 749,307 + ybgQ b0718 0.15 +0.3 749,307 + ybgQ b0718 0.15 -0.4 749,308 - ybgQ b0718 0.15 -1.7 749,308 - ybgQ b0718 0.15 -1.6 749,363 + ybgQ b0718 0.17 -0.7 749,511 - ybgQ b0718 0.23 +2.6 749,511 - ybgQ b0718 0.23 +0.7 749,562 + ybgQ b0718 0.25 +0.9 749,593 - ybgQ b0718 0.26 +0.4 749,680 - ybgQ b0718 0.30 +0.2 749,695 - ybgQ b0718 0.31 -0.3 749,706 - ybgQ b0718 0.31 +0.4 749,764 + ybgQ b0718 0.33 +0.5 749,764 + ybgQ b0718 0.33 +0.3 749,805 - ybgQ b0718 0.35 +2.0 749,861 + ybgQ b0718 0.37 +0.9 749,861 + ybgQ b0718 0.37 +0.4 749,912 + ybgQ b0718 0.40 -0.3 749,929 + ybgQ b0718 0.40 +5.4 749,929 + ybgQ b0718 0.40 +0.6 750,124 + ybgQ b0718 0.48 +1.2 750,129 + ybgQ b0718 0.48 +0.0 750,160 - ybgQ b0718 0.50 -0.8 750,263 - ybgQ b0718 0.54 +0.6 750,273 - ybgQ b0718 0.54 +0.7 750,273 - ybgQ b0718 0.54 +0.9 750,374 - ybgQ b0718 0.58 +0.5 750,374 - ybgQ b0718 0.58 +1.3 750,432 + ybgQ b0718 0.61 +1.8 750,461 - ybgQ b0718 0.62 -1.9 750,471 - ybgQ b0718 0.62 +0.8 750,477 + ybgQ b0718 0.63 +1.0 750,570 + ybgQ b0718 0.66 +0.1 750,573 - ybgQ b0718 0.67 +0.1 750,604 - ybgQ b0718 0.68 -0.8 750,640 - ybgQ b0718 0.69 +0.4 750,706 - ybgQ b0718 0.72 -0.4 750,706 - ybgQ b0718 0.72 +1.5 750,743 - ybgQ b0718 0.73 -0.0 750,807 - ybgQ b0718 0.76 +2.8 750,847 + ybgQ b0718 0.78 -1.1 750,847 + ybgQ b0718 0.78 -0.6 750,853 - ybgQ b0718 0.78 -0.0 750,869 - ybgQ b0718 0.79 +0.3 750,869 - ybgQ b0718 0.79 -1.5 750,874 + ybgQ b0718 0.79 -0.3 750,879 - ybgQ b0718 0.79 +0.3 750,882 + ybgQ b0718 0.79 +0.5 750,932 - ybgQ b0718 0.81 -2.3 750,948 + ybgQ b0718 0.82 -0.7 750,958 - ybgQ b0718 0.82 +0.5 750,958 - ybgQ b0718 0.82 -0.8 750,971 + ybgQ b0718 0.83 -1.3 750,986 + ybgQ b0718 0.83 -0.4 750,991 + ybgQ b0718 0.84 +0.9 751,065 + ybgQ b0718 0.87 +0.1 751,074 + ybgQ b0718 0.87 -3.8 751,077 + ybgQ b0718 0.87 -0.9 751,078 + ybgQ b0718 0.87 +1.0 751,078 + ybgQ b0718 0.87 +0.1 751,078 + ybgQ b0718 0.87 +1.2 751,088 + ybgQ b0718 0.88 +0.3 751,088 + ybgQ b0718 0.88 +1.0 751,093 + ybgQ b0718 0.88 -0.3 751,102 + ybgQ b0718 0.88 -1.2 751,134 + ybgQ b0718 0.89 +3.2 751,156 + -0.4 751,202 + +0.1 751,337 + -0.4 751,342 + -1.0 751,348 + -1.6 751,348 + -1.0 751,349 + +1.0 751,349 + -3.5 751,357 - +2.4 751,357 - +2.4 751,358 + +0.1 751,363 + -0.3 751,363 + +0.1 751,363 + -0.2 751,363 + +1.7 751,363 + +0.8 751,363 + -0.8 751,363 + +1.0 751,363 + -0.9 751,363 + -2.3 751,363 + -0.9 751,363 + -0.8 751,396 + +2.5 751,396 + -2.7 751,404 - +2.4 751,463 - +0.0 751,479 - +0.5 751,490 - +2.6 751,495 - -1.4 751,497 - +0.7 751,524 - ybgD b0719 0.13 -0.2 751,526 - ybgD b0719 0.13 +1.2 751,548 - ybgD b0719 0.17 -1.3 751,559 - ybgD b0719 0.19 +0.5 751,564 - ybgD b0719 0.20 -0.6 751,564 - ybgD b0719 0.20 -2.4 751,564 - ybgD b0719 0.20 -0.4 751,564 - ybgD b0719 0.20 +0.8 751,585 - ybgD b0719 0.23 +2.5 751,594 + ybgD b0719 0.25 -1.1 751,607 - ybgD b0719 0.27 -0.6 751,607 - ybgD b0719 0.27 +0.2 751,611 - ybgD b0719 0.28 +0.2 751,634 + ybgD b0719 0.32 -1.5 751,634 + ybgD b0719 0.32 +0.6 751,637 - ybgD b0719 0.33 +2.1 751,640 - ybgD b0719 0.33 +1.1 751,642 - ybgD b0719 0.34 -0.5 751,642 - ybgD b0719 0.34 +0.2 751,642 - ybgD b0719 0.34 +2.7 751,642 - ybgD b0719 0.34 -0.2 751,642 - ybgD b0719 0.34 +1.1 751,642 - ybgD b0719 0.34 -0.6 751,644 + ybgD b0719 0.34 -2.1 751,644 + ybgD b0719 0.34 -1.6 751,666 - ybgD b0719 0.38 -0.6 751,666 - ybgD b0719 0.38 -1.2 751,672 - ybgD b0719 0.39 +0.5 751,672 - ybgD b0719 0.39 -0.9 751,672 - ybgD b0719 0.39 -0.0 751,693 - ybgD b0719 0.43 +2.1 751,707 - ybgD b0719 0.45 -1.0 751,707 - ybgD b0719 0.45 -0.3 751,707 - ybgD b0719 0.45 -0.3 751,712 + ybgD b0719 0.46 +0.7 751,712 + ybgD b0719 0.46 -1.5 751,721 - ybgD b0719 0.47 -0.2 751,750 - ybgD b0719 0.53 +2.1 751,757 + ybgD b0719 0.54 -0.8 751,757 + ybgD b0719 0.54 -1.4 751,772 + ybgD b0719 0.56 -0.2 751,791 + ybgD b0719 0.60 -0.5 751,791 + ybgD b0719 0.60 +0.5 751,794 + ybgD b0719 0.60 -3.5 751,794 + ybgD b0719 0.60 +1.7 751,805 + ybgD b0719 0.62 -0.3 751,813 + ybgD b0719 0.64 -3.4 751,827 + ybgD b0719 0.66 +0.7 751,829 + ybgD b0719 0.66 +0.3 751,840 + ybgD b0719 0.68 +0.4 751,840 + ybgD b0719 0.68 -0.4 751,840 + ybgD b0719 0.68 -0.8 751,850 + ybgD b0719 0.70 -0.3 751,909 + ybgD b0719 0.81 +1.1 751,915 + ybgD b0719 0.82 -4.1 751,915 + ybgD b0719 0.82 -3.4 751,938 + ybgD b0719 0.86 -0.6 751,938 + ybgD b0719 0.86 +0.9 751,951 + ybgD b0719 0.88 -1.3 751,951 + ybgD b0719 0.88 +0.7 751,951 + ybgD b0719 0.88 +0.8 751,951 + ybgD b0719 0.88 +2.4 751,951 + ybgD b0719 0.88 -1.9 751,951 + ybgD b0719 0.88 +1.6 751,951 + ybgD b0719 0.88 -2.0 751,952 + ybgD b0719 0.88 +0.8 751,959 - ybgD b0719 0.89 -0.1 751,959 - ybgD b0719 0.89 +0.8 751,959 - ybgD b0719 0.89 -0.9 751,966 + -2.4 751,966 + +0.3 751,966 + -2.3 751,966 + +0.4 751,968 + -1.8 751,968 + +0.1 751,968 + -0.4 751,976 + +0.7 751,976 - +0.0 751,978 + +0.0 751,978 + -0.6 751,978 + -0.9 751,978 + +0.4 751,978 + -0.4 751,978 + +0.1 751,978 + -2.0 751,981 - +0.4 751,981 - +2.4 751,983 + +0.6 752,008 + -3.5 752,013 + -0.4 752,013 + +0.8 752,013 + +1.1 752,013 + +0.3 752,034 + +1.3 752,034 + -0.1 752,034 + +0.3 752,035 + +0.2 752,036 + -0.6 752,041 + -0.4 752,041 + +1.1 752,041 + -0.8 752,192 - +1.4 752,350 - +0.9
Or see this region's nucleotide sequence