Experiment: PBS_cage_2_mouse_3_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbmA and yaiW are separated by 12 nucleotides yaiW and yaiY are separated by 58 nucleotides yaiY and b0380 are separated by 259 nucleotides b0380 and ddlA are separated by 23 nucleotides
b0377: sbmA - predicted transporter (NCBI), at 395,863 to 397,083
sbmA
b0378: yaiW - predicted DNA-binding transcriptional regulator (NCBI), at 397,096 to 398,190
yaiW
b0379: yaiY - predicted inner membrane protein (NCBI), at 398,249 to 398,557
yaiY
b0380: b0380 - orf, hypothetical protein (VIMSS), at 398,817 to 399,029
b0380
b0381: ddlA - D-alanylalanine synthetase (NCBI), at 399,053 to 400,147
ddlA
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 396.114 kb on + strand, within sbmA at 396.114 kb on + strand, within sbmA at 396.126 kb on + strand, within sbmA at 396.136 kb on + strand, within sbmA at 396.136 kb on + strand, within sbmA at 396.136 kb on + strand, within sbmA at 396.178 kb on + strand, within sbmA at 396.202 kb on - strand, within sbmA at 396.207 kb on + strand, within sbmA at 396.207 kb on + strand, within sbmA at 396.216 kb on + strand, within sbmA at 396.291 kb on - strand, within sbmA at 396.291 kb on - strand, within sbmA at 396.309 kb on + strand, within sbmA at 396.349 kb on + strand, within sbmA at 396.349 kb on + strand, within sbmA at 396.359 kb on + strand, within sbmA at 396.359 kb on + strand, within sbmA at 396.386 kb on - strand, within sbmA at 396.437 kb on - strand, within sbmA at 396.580 kb on - strand, within sbmA at 396.580 kb on - strand, within sbmA at 396.586 kb on + strand, within sbmA at 396.623 kb on + strand, within sbmA at 396.691 kb on - strand, within sbmA at 396.765 kb on + strand, within sbmA at 396.775 kb on + strand, within sbmA at 396.819 kb on - strand, within sbmA at 396.881 kb on + strand, within sbmA at 396.882 kb on - strand, within sbmA at 396.882 kb on - strand, within sbmA at 396.900 kb on + strand, within sbmA at 396.904 kb on - strand, within sbmA at 396.907 kb on - strand, within sbmA at 396.907 kb on - strand, within sbmA at 396.911 kb on + strand, within sbmA at 397.014 kb on - strand at 397.014 kb on - strand at 397.025 kb on + strand at 397.033 kb on - strand at 397.066 kb on + strand at 397.163 kb on - strand at 397.163 kb on - strand at 397.165 kb on - strand at 397.225 kb on - strand, within yaiW at 397.330 kb on + strand, within yaiW at 397.421 kb on + strand, within yaiW at 397.557 kb on + strand, within yaiW at 397.557 kb on + strand, within yaiW at 397.565 kb on - strand, within yaiW at 397.619 kb on - strand, within yaiW at 397.730 kb on - strand, within yaiW at 397.730 kb on - strand, within yaiW at 397.736 kb on - strand, within yaiW at 397.761 kb on + strand, within yaiW at 397.802 kb on - strand, within yaiW at 397.804 kb on + strand, within yaiW at 397.818 kb on + strand, within yaiW at 397.847 kb on + strand, within yaiW at 397.847 kb on + strand, within yaiW at 397.891 kb on + strand, within yaiW at 397.987 kb on + strand, within yaiW at 398.006 kb on + strand, within yaiW at 398.025 kb on + strand, within yaiW at 398.025 kb on + strand, within yaiW at 398.318 kb on - strand, within yaiY at 398.351 kb on + strand, within yaiY at 398.386 kb on - strand, within yaiY at 398.386 kb on - strand, within yaiY at 398.392 kb on - strand, within yaiY at 398.392 kb on - strand, within yaiY at 398.593 kb on - strand at 398.608 kb on + strand at 398.613 kb on - strand at 398.633 kb on - strand at 398.755 kb on + strand at 398.755 kb on + strand at 398.809 kb on + strand at 398.852 kb on + strand, within b0380 at 398.860 kb on - strand, within b0380 at 398.860 kb on - strand, within b0380 at 398.883 kb on + strand, within b0380 at 398.933 kb on + strand, within b0380 at 398.933 kb on + strand, within b0380 at 398.933 kb on + strand, within b0380 at 398.959 kb on - strand, within b0380 at 398.959 kb on - strand, within b0380 at 399.034 kb on + strand at 399.034 kb on + strand at 399.079 kb on + strand at 399.092 kb on - strand at 399.092 kb on - strand at 399.129 kb on + strand at 399.129 kb on + strand at 399.129 kb on + strand at 399.137 kb on - strand at 399.137 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_2_mouse_3_Cecum_40 hr remove 396,114 + sbmA b0377 0.21 +0.2 396,114 + sbmA b0377 0.21 +0.8 396,126 + sbmA b0377 0.22 -0.1 396,136 + sbmA b0377 0.22 +0.7 396,136 + sbmA b0377 0.22 +2.9 396,136 + sbmA b0377 0.22 +6.3 396,178 + sbmA b0377 0.26 -0.2 396,202 - sbmA b0377 0.28 +1.0 396,207 + sbmA b0377 0.28 +1.1 396,207 + sbmA b0377 0.28 +0.9 396,216 + sbmA b0377 0.29 -1.3 396,291 - sbmA b0377 0.35 -1.3 396,291 - sbmA b0377 0.35 -0.5 396,309 + sbmA b0377 0.37 -1.7 396,349 + sbmA b0377 0.40 -0.6 396,349 + sbmA b0377 0.40 -0.2 396,359 + sbmA b0377 0.41 +0.4 396,359 + sbmA b0377 0.41 -0.0 396,386 - sbmA b0377 0.43 +0.3 396,437 - sbmA b0377 0.47 +0.5 396,580 - sbmA b0377 0.59 +1.0 396,580 - sbmA b0377 0.59 +1.6 396,586 + sbmA b0377 0.59 -1.2 396,623 + sbmA b0377 0.62 -0.3 396,691 - sbmA b0377 0.68 -0.9 396,765 + sbmA b0377 0.74 -0.6 396,775 + sbmA b0377 0.75 -0.4 396,819 - sbmA b0377 0.78 +0.1 396,881 + sbmA b0377 0.83 -0.1 396,882 - sbmA b0377 0.83 +0.2 396,882 - sbmA b0377 0.83 -0.1 396,900 + sbmA b0377 0.85 -1.1 396,904 - sbmA b0377 0.85 -2.3 396,907 - sbmA b0377 0.86 -0.1 396,907 - sbmA b0377 0.86 -1.4 396,911 + sbmA b0377 0.86 +1.1 397,014 - +0.3 397,014 - -0.5 397,025 + -0.6 397,033 - +0.5 397,066 + +0.6 397,163 - -2.6 397,163 - -1.8 397,165 - -2.4 397,225 - yaiW b0378 0.12 -0.3 397,330 + yaiW b0378 0.21 -1.4 397,421 + yaiW b0378 0.30 +0.3 397,557 + yaiW b0378 0.42 +0.3 397,557 + yaiW b0378 0.42 -0.3 397,565 - yaiW b0378 0.43 -0.8 397,619 - yaiW b0378 0.48 -0.3 397,730 - yaiW b0378 0.58 -1.2 397,730 - yaiW b0378 0.58 -0.7 397,736 - yaiW b0378 0.58 -1.8 397,761 + yaiW b0378 0.61 -0.6 397,802 - yaiW b0378 0.64 -0.5 397,804 + yaiW b0378 0.65 +0.0 397,818 + yaiW b0378 0.66 +0.0 397,847 + yaiW b0378 0.69 +0.1 397,847 + yaiW b0378 0.69 -2.5 397,891 + yaiW b0378 0.73 -0.9 397,987 + yaiW b0378 0.81 +0.0 398,006 + yaiW b0378 0.83 -0.1 398,025 + yaiW b0378 0.85 -2.5 398,025 + yaiW b0378 0.85 +0.3 398,318 - yaiY b0379 0.22 -0.2 398,351 + yaiY b0379 0.33 +3.0 398,386 - yaiY b0379 0.44 -0.2 398,386 - yaiY b0379 0.44 -0.0 398,392 - yaiY b0379 0.46 +1.3 398,392 - yaiY b0379 0.46 +1.3 398,593 - -0.2 398,608 + +0.5 398,613 - -2.0 398,633 - +0.9 398,755 + -1.1 398,755 + -0.8 398,809 + +2.8 398,852 + b0380 b0380 0.16 +0.1 398,860 - b0380 b0380 0.20 +0.2 398,860 - b0380 b0380 0.20 +0.3 398,883 + b0380 b0380 0.31 +1.0 398,933 + b0380 b0380 0.54 +0.7 398,933 + b0380 b0380 0.54 +0.6 398,933 + b0380 b0380 0.54 +0.9 398,959 - b0380 b0380 0.67 -0.4 398,959 - b0380 b0380 0.67 -2.6 399,034 + -1.6 399,034 + +0.1 399,079 + -0.1 399,092 - +0.8 399,092 - -2.6 399,129 + +0.8 399,129 + -1.4 399,129 + -0.3 399,137 - -0.1 399,137 - -1.5
Or see this region's nucleotide sequence