Experiment: PBS_cage_2_mouse_2_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliI and yliJ overlap by 4 nucleotides yliJ and dacC are separated by 246 nucleotides
b0837: yliI - predicted dehydrogenase (NCBI), at 877,965 to 879,080
yliI
b0838: yliJ - putative transferase (VIMSS), at 879,077 to 879,703
yliJ
b0839: dacC - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI), at 879,950 to 881,152
dacC
Position (kb) 879
880 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 878.117 kb on - strand, within yliI at 878.117 kb on - strand, within yliI at 878.310 kb on + strand, within yliI at 878.318 kb on - strand, within yliI at 878.318 kb on - strand, within yliI at 878.617 kb on + strand, within yliI at 878.644 kb on + strand, within yliI at 878.644 kb on + strand, within yliI at 878.654 kb on - strand, within yliI at 878.786 kb on + strand, within yliI at 878.847 kb on - strand, within yliI at 878.847 kb on - strand, within yliI at 878.848 kb on + strand, within yliI at 879.008 kb on + strand at 879.026 kb on + strand at 879.046 kb on - strand at 879.046 kb on - strand at 879.084 kb on - strand at 879.092 kb on + strand at 879.138 kb on - strand at 879.167 kb on + strand, within yliJ at 879.170 kb on - strand, within yliJ at 879.226 kb on - strand, within yliJ at 879.226 kb on - strand, within yliJ at 879.353 kb on - strand, within yliJ at 879.353 kb on - strand, within yliJ at 879.523 kb on - strand, within yliJ at 879.525 kb on - strand, within yliJ at 879.599 kb on - strand, within yliJ at 879.599 kb on - strand, within yliJ at 879.613 kb on - strand, within yliJ at 879.637 kb on + strand, within yliJ at 879.680 kb on + strand at 879.703 kb on + strand at 879.727 kb on + strand at 879.727 kb on + strand at 879.741 kb on - strand at 879.742 kb on - strand at 879.817 kb on - strand at 879.961 kb on - strand at 879.963 kb on + strand at 880.059 kb on - strand at 880.156 kb on + strand, within dacC at 880.170 kb on - strand, within dacC at 880.270 kb on - strand, within dacC at 880.298 kb on + strand, within dacC at 880.298 kb on + strand, within dacC at 880.306 kb on + strand, within dacC at 880.453 kb on + strand, within dacC at 880.472 kb on - strand, within dacC at 880.489 kb on + strand, within dacC at 880.524 kb on - strand, within dacC at 880.550 kb on + strand, within dacC at 880.550 kb on + strand, within dacC at 880.568 kb on + strand, within dacC at 880.676 kb on + strand, within dacC
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_2_mouse_2_Cecum_40 hr remove 878,117 - yliI b0837 0.14 +1.4 878,117 - yliI b0837 0.14 -0.6 878,310 + yliI b0837 0.31 +0.5 878,318 - yliI b0837 0.32 +0.5 878,318 - yliI b0837 0.32 +0.2 878,617 + yliI b0837 0.58 +1.4 878,644 + yliI b0837 0.61 -5.3 878,644 + yliI b0837 0.61 +3.5 878,654 - yliI b0837 0.62 +1.1 878,786 + yliI b0837 0.74 -0.1 878,847 - yliI b0837 0.79 +1.6 878,847 - yliI b0837 0.79 +3.6 878,848 + yliI b0837 0.79 +0.7 879,008 + +1.1 879,026 + -0.5 879,046 - -0.9 879,046 - +2.3 879,084 - -0.7 879,092 + +0.8 879,138 - -0.1 879,167 + yliJ b0838 0.14 +0.2 879,170 - yliJ b0838 0.15 +0.1 879,226 - yliJ b0838 0.24 +0.7 879,226 - yliJ b0838 0.24 -0.0 879,353 - yliJ b0838 0.44 +0.4 879,353 - yliJ b0838 0.44 -3.6 879,523 - yliJ b0838 0.71 +0.1 879,525 - yliJ b0838 0.71 +1.2 879,599 - yliJ b0838 0.83 -2.1 879,599 - yliJ b0838 0.83 +7.9 879,613 - yliJ b0838 0.85 -1.3 879,637 + yliJ b0838 0.89 +0.8 879,680 + +0.5 879,703 + +0.9 879,727 + +0.3 879,727 + +1.1 879,741 - -0.1 879,742 - +0.6 879,817 - -0.1 879,961 - +0.8 879,963 + +0.1 880,059 - -1.6 880,156 + dacC b0839 0.17 -0.0 880,170 - dacC b0839 0.18 -0.2 880,270 - dacC b0839 0.27 -3.6 880,298 + dacC b0839 0.29 -0.6 880,298 + dacC b0839 0.29 +0.0 880,306 + dacC b0839 0.30 -0.8 880,453 + dacC b0839 0.42 -0.4 880,472 - dacC b0839 0.43 +0.0 880,489 + dacC b0839 0.45 +0.1 880,524 - dacC b0839 0.48 +0.7 880,550 + dacC b0839 0.50 -2.3 880,550 + dacC b0839 0.50 -4.4 880,568 + dacC b0839 0.51 +3.2 880,676 + dacC b0839 0.60 +0.4
Or see this region's nucleotide sequence