Experiment: PBS_cage_2_mouse_2_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliG and yliH are separated by 212 nucleotides yliH and yliI are separated by 110 nucleotides yliI and yliJ overlap by 4 nucleotides yliJ and dacC are separated by 246 nucleotides
b0835: yliG - predicted SAM-dependent methyltransferase (NCBI), at 875,933 to 877,258
yliG
b0836: yliH - hypothetical protein (NCBI), at 877,471 to 877,854
yliH
b0837: yliI - predicted dehydrogenase (NCBI), at 877,965 to 879,080
yliI
b0838: yliJ - putative transferase (VIMSS), at 879,077 to 879,703
yliJ
b0839: dacC - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI), at 879,950 to 881,152
dacC
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 876.969 kb on + strand, within yliG at 876.969 kb on + strand, within yliG at 877.009 kb on + strand, within yliG at 877.009 kb on + strand, within yliG at 877.078 kb on + strand, within yliG at 877.098 kb on - strand, within yliG at 877.138 kb on - strand at 877.141 kb on + strand at 877.395 kb on + strand at 877.451 kb on + strand at 877.515 kb on - strand, within yliH at 877.634 kb on + strand, within yliH at 877.762 kb on + strand, within yliH at 877.762 kb on + strand, within yliH at 877.799 kb on + strand, within yliH at 877.846 kb on - strand at 877.936 kb on + strand at 877.940 kb on + strand at 877.940 kb on + strand at 877.970 kb on - strand at 877.970 kb on - strand at 878.117 kb on - strand, within yliI at 878.117 kb on - strand, within yliI at 878.310 kb on + strand, within yliI at 878.318 kb on - strand, within yliI at 878.318 kb on - strand, within yliI at 878.617 kb on + strand, within yliI at 878.644 kb on + strand, within yliI at 878.644 kb on + strand, within yliI at 878.654 kb on - strand, within yliI at 878.786 kb on + strand, within yliI at 878.847 kb on - strand, within yliI at 878.847 kb on - strand, within yliI at 878.848 kb on + strand, within yliI at 879.008 kb on + strand at 879.026 kb on + strand at 879.046 kb on - strand at 879.046 kb on - strand at 879.084 kb on - strand at 879.092 kb on + strand at 879.138 kb on - strand at 879.167 kb on + strand, within yliJ at 879.170 kb on - strand, within yliJ at 879.226 kb on - strand, within yliJ at 879.226 kb on - strand, within yliJ at 879.353 kb on - strand, within yliJ at 879.353 kb on - strand, within yliJ at 879.523 kb on - strand, within yliJ at 879.525 kb on - strand, within yliJ at 879.599 kb on - strand, within yliJ at 879.599 kb on - strand, within yliJ at 879.613 kb on - strand, within yliJ at 879.637 kb on + strand, within yliJ at 879.680 kb on + strand at 879.703 kb on + strand at 879.727 kb on + strand at 879.727 kb on + strand at 879.741 kb on - strand at 879.742 kb on - strand at 879.817 kb on - strand at 879.961 kb on - strand at 879.963 kb on + strand at 880.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_2_mouse_2_Cecum_40 hr remove 876,969 + yliG b0835 0.78 -2.7 876,969 + yliG b0835 0.78 +2.1 877,009 + yliG b0835 0.81 -0.4 877,009 + yliG b0835 0.81 +0.3 877,078 + yliG b0835 0.86 +0.1 877,098 - yliG b0835 0.88 -1.0 877,138 - +0.2 877,141 + -2.7 877,395 + +1.2 877,451 + +0.4 877,515 - yliH b0836 0.11 +1.4 877,634 + yliH b0836 0.42 -0.3 877,762 + yliH b0836 0.76 -1.3 877,762 + yliH b0836 0.76 -0.8 877,799 + yliH b0836 0.85 -4.0 877,846 - -0.1 877,936 + +0.3 877,940 + +0.4 877,940 + +0.0 877,970 - +0.1 877,970 - -2.4 878,117 - yliI b0837 0.14 +1.4 878,117 - yliI b0837 0.14 -0.6 878,310 + yliI b0837 0.31 +0.5 878,318 - yliI b0837 0.32 +0.5 878,318 - yliI b0837 0.32 +0.2 878,617 + yliI b0837 0.58 +1.4 878,644 + yliI b0837 0.61 -5.3 878,644 + yliI b0837 0.61 +3.5 878,654 - yliI b0837 0.62 +1.1 878,786 + yliI b0837 0.74 -0.1 878,847 - yliI b0837 0.79 +1.6 878,847 - yliI b0837 0.79 +3.6 878,848 + yliI b0837 0.79 +0.7 879,008 + +1.1 879,026 + -0.5 879,046 - -0.9 879,046 - +2.3 879,084 - -0.7 879,092 + +0.8 879,138 - -0.1 879,167 + yliJ b0838 0.14 +0.2 879,170 - yliJ b0838 0.15 +0.1 879,226 - yliJ b0838 0.24 +0.7 879,226 - yliJ b0838 0.24 -0.0 879,353 - yliJ b0838 0.44 +0.4 879,353 - yliJ b0838 0.44 -3.6 879,523 - yliJ b0838 0.71 +0.1 879,525 - yliJ b0838 0.71 +1.2 879,599 - yliJ b0838 0.83 -2.1 879,599 - yliJ b0838 0.83 +7.9 879,613 - yliJ b0838 0.85 -1.3 879,637 + yliJ b0838 0.89 +0.8 879,680 + +0.5 879,703 + +0.9 879,727 + +0.3 879,727 + +1.1 879,741 - -0.1 879,742 - +0.6 879,817 - -0.1 879,961 - +0.8 879,963 + +0.1 880,059 - -1.6
Or see this region's nucleotide sequence