Strain Fitness in Escherichia coli BW25113 around b4466

Experiment: PBS_cage_2_mouse_1_Cecum_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_2_mouse_1_Cecum_40 hr
3,111,599	-				+0.9
3,111,599	-				+3.2
3,111,599	-				+1.1
3,111,599	-				-1.8
3,111,604	-				+0.1
3,111,609	-				+0.2
3,111,616	-				+0.0
3,111,626	-				-1.7
3,111,636	-				-0.2
3,111,638	-				-1.1
3,111,638	-				+2.0
3,111,638	-				+2.2
3,111,664	+	b2972	b2972	0.12	+0.8
3,111,667	-	b2972	b2972	0.13	+0.3
3,111,667	-	b2972	b2972	0.13	-1.4
3,111,671	-	b2972	b2972	0.13	+0.9
3,111,703	-	b2972	b2972	0.17	-3.3
3,111,705	-	b2972	b2972	0.17	+0.9
3,111,705	-	b2972	b2972	0.17	+1.1
3,111,716	-	b2972	b2972	0.19	+0.1
3,111,716	-	b2972	b2972	0.19	+0.1
3,111,724	+	b2972	b2972	0.20	+1.3
3,111,732	-	b2972	b2972	0.21	-2.1
3,111,750	-	b2972	b2972	0.23	-0.4
3,111,754	+	b2972	b2972	0.23	-3.8
3,111,754	+	b2972	b2972	0.23	+0.5
3,111,762	-	b2972	b2972	0.24	-0.6
3,111,762	-	b2972	b2972	0.24	-0.6
3,111,788	-	b2972	b2972	0.28	-1.4
3,111,804	-	b2972	b2972	0.30	-2.3
3,111,823	+	b2972	b2972	0.32	-1.2
3,111,823	+	b2972	b2972	0.32	+1.3
3,111,831	-	b2972	b2972	0.33	-0.9
3,111,834	-	b2972	b2972	0.33	-0.3
3,111,849	+	b2972	b2972	0.35	-0.1
3,111,855	-	b2972	b2972	0.36	-0.0
3,111,857	-	b2972	b2972	0.36	+2.9
3,111,864	+	b2972	b2972	0.37	-0.1
3,111,871	-	b2972	b2972	0.38	+1.0
3,111,878	-	b2972	b2972	0.39	-4.5
3,111,880	+	b2972	b2972	0.39	+1.3
3,111,896	+	b2972	b2972	0.41	+1.5
3,112,049	+	b2972	b2972	0.60	-0.5
3,112,132	-	b2972	b2972	0.70	+0.1
3,112,132	-	b2972	b2972	0.70	+0.8
3,112,342	-				+0.9
3,112,495	+				+0.5
3,112,507	+				-0.2
3,112,571	-				-4.0
3,112,571	-				+1.0
3,112,572	-				-0.2
3,112,572	-				-0.6
3,112,625	+				-3.0
3,112,681	-				+1.0
3,112,782	+				+1.0
3,112,782	+				+0.6
3,112,785	-				+1.0
3,112,789	+				-0.2
3,112,791	-				-0.0
3,112,797	-				+0.0
3,112,831	-				+0.2
3,112,831	-				-1.3
3,112,873	-				+1.2
3,112,873	-				-4.4
3,112,907	-				-0.5
3,112,912	-				+0.4
3,112,912	-				+1.3
3,112,959	-				-2.5
3,112,966	-				-4.1
3,112,966	-				-1.3
3,113,033	+	yghJ	b4466	0.10	+0.3
3,113,033	+	yghJ	b4466	0.10	-0.6
3,113,033	+	yghJ	b4466	0.10	+0.4
3,113,080	-	yghJ	b4466	0.11	-2.1
3,113,140	+	yghJ	b4466	0.12	+0.7
3,113,140	+	yghJ	b4466	0.12	-0.5
3,113,148	-	yghJ	b4466	0.13	-2.1
3,113,160	+	yghJ	b4466	0.13	-1.0
3,113,287	+	yghJ	b4466	0.16	-0.2
3,113,403	+	yghJ	b4466	0.18	-1.0
3,113,403	+	yghJ	b4466	0.18	-1.1
3,113,521	+	yghJ	b4466	0.21	+0.9
3,113,529	-	yghJ	b4466	0.21	+1.6
3,113,529	-	yghJ	b4466	0.21	-1.1
3,113,602	-	yghJ	b4466	0.23	+0.8
3,113,626	-	yghJ	b4466	0.23	-0.8
3,113,626	-	yghJ	b4466	0.23	+0.8
3,113,655	+	yghJ	b4466	0.24	+1.0
3,113,674	-	yghJ	b4466	0.24	-0.3
3,113,682	+	yghJ	b4466	0.24	+0.1
3,113,682	+	yghJ	b4466	0.24	-1.5
3,113,690	+	yghJ	b4466	0.25	+1.4
3,113,691	-	yghJ	b4466	0.25	+0.1
3,113,691	-	yghJ	b4466	0.25	-4.5
3,113,700	-	yghJ	b4466	0.25	-0.6
3,113,731	+	yghJ	b4466	0.25	+1.4
3,113,759	+	yghJ	b4466	0.26	-1.0
3,113,759	+	yghJ	b4466	0.26	+1.6
3,113,955	+	yghJ	b4466	0.30	+1.9
3,113,962	-	yghJ	b4466	0.30	+0.6
3,114,066	+	yghJ	b4466	0.33	-2.1
3,114,098	+	yghJ	b4466	0.33	+0.3
3,114,117	-	yghJ	b4466	0.34	+0.8
3,114,117	-	yghJ	b4466	0.34	+0.2
3,114,166	+	yghJ	b4466	0.35	+2.0
3,114,166	+	yghJ	b4466	0.35	-4.9
3,114,171	+	yghJ	b4466	0.35	-5.1
3,114,171	+	yghJ	b4466	0.35	+2.5
3,114,215	+	yghJ	b4466	0.36	+0.7
3,114,283	+	yghJ	b4466	0.37	-2.7
3,114,318	-	yghJ	b4466	0.38	+0.5
3,114,318	-	yghJ	b4466	0.38	-3.6
3,114,372	+	yghJ	b4466	0.39	-0.8
3,114,372	+	yghJ	b4466	0.39	+2.0
3,114,439	+	yghJ	b4466	0.41	-0.6
3,114,462	+	yghJ	b4466	0.41	+0.0
3,114,462	+	yghJ	b4466	0.41	-0.0
3,114,505	+	yghJ	b4466	0.42	+1.2
3,114,505	+	yghJ	b4466	0.42	+0.9
3,114,737	+	yghJ	b4466	0.47	-0.2
3,114,737	+	yghJ	b4466	0.47	-0.1
3,114,754	+	yghJ	b4466	0.48	+1.4
3,114,762	-	yghJ	b4466	0.48	-5.7
3,114,762	-	yghJ	b4466	0.48	-1.4
3,114,826	-	yghJ	b4466	0.49	-0.9
3,114,826	-	yghJ	b4466	0.49	+0.9
3,114,861	-	yghJ	b4466	0.50	+1.0
3,114,917	-	yghJ	b4466	0.51	-4.9
3,114,960	+	yghJ	b4466	0.52	-0.3
3,115,015	-	yghJ	b4466	0.54	-0.9
3,115,096	-	yghJ	b4466	0.55	+0.5
3,115,145	-	yghJ	b4466	0.56	+1.0
3,115,145	-	yghJ	b4466	0.56	-1.3
3,115,215	-	yghJ	b4466	0.58	+0.4
3,115,242	+	yghJ	b4466	0.59	+0.4
3,115,248	-	yghJ	b4466	0.59	+0.6
3,115,262	-	yghJ	b4466	0.59	-0.4
3,115,262	-	yghJ	b4466	0.59	-4.9
3,115,311	-	yghJ	b4466	0.60	-1.0
3,115,357	+	yghJ	b4466	0.61	-1.3
3,115,363	-	yghJ	b4466	0.61	-1.0
3,115,365	-	yghJ	b4466	0.61	+0.8
3,115,365	-	yghJ	b4466	0.61	-4.6
3,115,384	+	yghJ	b4466	0.62	+0.2
3,115,431	-	yghJ	b4466	0.63	-1.6
3,115,437	-	yghJ	b4466	0.63	-2.6
3,115,437	-	yghJ	b4466	0.63	+0.6
3,115,441	+	yghJ	b4466	0.63	+0.7
3,115,452	+	yghJ	b4466	0.63	+0.3
3,115,452	+	yghJ	b4466	0.63	+0.5
3,115,502	-	yghJ	b4466	0.64	-1.7
3,115,502	-	yghJ	b4466	0.64	-0.9
3,115,529	-	yghJ	b4466	0.65	-0.2
3,115,530	-	yghJ	b4466	0.65	+0.1
3,115,667	+	yghJ	b4466	0.68	-1.1
3,115,667	+	yghJ	b4466	0.68	-0.4
3,115,711	-	yghJ	b4466	0.69	+0.7
3,115,846	-	yghJ	b4466	0.72	-1.7
3,115,846	-	yghJ	b4466	0.72	-1.5
3,115,884	+	yghJ	b4466	0.73	+0.2
3,115,884	+	yghJ	b4466	0.73	+2.0
3,115,915	+	yghJ	b4466	0.73	-2.6
3,115,915	+	yghJ	b4466	0.73	+0.5
3,115,966	+	yghJ	b4466	0.74	-0.7
3,115,988	+	yghJ	b4466	0.75	+0.8
3,116,031	+	yghJ	b4466	0.76	-4.4
3,116,086	-	yghJ	b4466	0.77	+0.0
3,116,110	+	yghJ	b4466	0.78	-0.1
3,116,127	-	yghJ	b4466	0.78	-4.2
3,116,163	-	yghJ	b4466	0.79	-1.4
3,116,282	-	yghJ	b4466	0.81	-3.7
3,116,282	-	yghJ	b4466	0.81	-4.1
3,116,329	+	yghJ	b4466	0.82	+0.7
3,116,329	+	yghJ	b4466	0.82	-0.4
3,116,409	-	yghJ	b4466	0.84	+0.2
3,116,409	-	yghJ	b4466	0.84	-0.2
3,116,523	-	yghJ	b4466	0.87	-0.4
3,116,537	-	yghJ	b4466	0.87	-0.9
3,116,579	-	yghJ	b4466	0.88	+1.9
3,116,603	-	yghJ	b4466	0.88	-0.5
3,116,603	-	yghJ	b4466	0.88	-5.2
3,116,811	+				-2.0
3,116,815	-				-0.9
3,116,824	+				+0.5
3,116,849	+				+0.8
3,116,929	-				-0.3
3,117,026	-				-4.4
3,117,067	-				+1.6
3,117,072	+				+0.5
3,117,074	+				-2.7
3,117,077	+				-0.3
3,117,077	+				+1.0
3,117,077	-				-0.4
3,117,080	-				-2.1
3,117,080	-				-5.4
3,117,085	+				-2.3
3,117,092	-				+1.6
3,117,132	+				-0.6
3,117,132	+				-0.9
3,117,146	-				-2.6
3,117,211	+				+0.5
3,117,275	+				-2.9
3,117,283	-				-3.2
3,117,408	+				-3.4
3,117,408	+				-2.1
3,117,412	+				-0.7
3,117,430	-				+2.6
3,117,430	-				+1.0
3,117,441	+				-2.9
3,117,586	+				-1.3
3,117,599	-				+0.7
3,117,599	-				+2.4
3,117,611	-				+0.9
3,117,611	-				+1.3
3,117,633	-				-0.8
3,117,640	+				+0.0
3,117,642	+				+0.3
3,117,644	+				-1.5
3,117,645	-				-0.3
3,117,649	+				+0.7
3,117,650	+				+0.3
3,117,650	+				-1.0
3,117,650	+				-0.2
3,117,650	-				-4.7
3,117,650	-				-0.2
3,117,650	-				+1.5
3,117,651	+				+0.1
3,117,652	-				+0.9
3,117,657	-				-2.4
3,117,659	-				+1.3
3,117,662	+				+0.8
3,117,665	-				+0.6
3,117,697	+				+0.7
3,117,702	+				-0.2
3,117,702	+				+0.7
3,117,707	+				+2.3
3,117,707	+				-0.1
3,117,710	-				-0.4
3,117,710	-				+0.9
3,117,752	-				+2.6
3,117,755	-				+1.0
3,117,757	+				+0.9
3,117,757	+				-0.3
3,117,830	+	yghK	b2975	0.13	-0.5
3,117,885	+	yghK	b2975	0.16	+0.1
3,117,885	+	yghK	b2975	0.16	-0.4
3,117,893	-	yghK	b2975	0.16	-0.7
3,117,896	-	yghK	b2975	0.16	+0.2
3,117,915	-	yghK	b2975	0.18	+0.0
3,117,965	-	yghK	b2975	0.21	+1.0
3,117,968	-	yghK	b2975	0.21	-0.9
3,117,975	+	yghK	b2975	0.21	-0.7
3,118,027	+	yghK	b2975	0.24	-3.2
3,118,027	+	yghK	b2975	0.24	-0.4
3,118,035	-	yghK	b2975	0.25	-4.3
3,118,035	-	yghK	b2975	0.25	+1.5
3,118,050	+	yghK	b2975	0.26	+0.7
3,118,054	+	yghK	b2975	0.26	-0.9
3,118,054	+	yghK	b2975	0.26	+0.4
3,118,107	+	yghK	b2975	0.29	-0.5
3,118,113	+	yghK	b2975	0.29	-0.3
3,118,127	-	yghK	b2975	0.30	+0.1
3,118,127	-	yghK	b2975	0.30	-0.4
3,118,130	+	yghK	b2975	0.30	-3.6