Experiment: PBS_cage_2_mouse_1_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgm and ybfP are separated by 213 nucleotides ybfP and ybfG are separated by 40 nucleotides ybfG and ybfI are separated by 123 nucleotides
b0688: pgm - phosphoglucomutase (NCBI), at 712,781 to 714,421
pgm
b0689: ybfP - hypothetical protein (NCBI), at 714,635 to 715,129
ybfP
b0691: ybfG - orf, hypothetical protein (VIMSS), at 715,170 to 715,820
ybfG
b4636: ybfI - no description, at 715,944 to 716,093
ybfI
Position (kb) 714
715
716 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 713.655 kb on - strand, within pgm at 713.777 kb on + strand, within pgm at 713.784 kb on - strand, within pgm at 713.863 kb on - strand, within pgm at 713.915 kb on + strand, within pgm at 713.955 kb on + strand, within pgm at 714.076 kb on + strand, within pgm at 714.206 kb on + strand, within pgm at 714.260 kb on + strand at 714.260 kb on + strand at 714.309 kb on - strand at 714.599 kb on + strand at 714.653 kb on - strand at 714.655 kb on + strand at 714.659 kb on + strand at 714.659 kb on + strand at 714.667 kb on - strand at 714.689 kb on - strand, within ybfP at 714.689 kb on - strand, within ybfP at 714.691 kb on + strand, within ybfP at 714.769 kb on - strand, within ybfP at 714.769 kb on - strand, within ybfP at 714.842 kb on + strand, within ybfP at 714.842 kb on + strand, within ybfP at 714.864 kb on + strand, within ybfP at 714.884 kb on + strand, within ybfP at 714.884 kb on + strand, within ybfP at 714.949 kb on - strand, within ybfP at 714.949 kb on - strand, within ybfP at 714.951 kb on - strand, within ybfP at 714.951 kb on - strand, within ybfP at 714.952 kb on - strand, within ybfP at 714.974 kb on + strand, within ybfP at 714.979 kb on + strand, within ybfP at 714.986 kb on + strand, within ybfP at 714.986 kb on + strand, within ybfP at 714.986 kb on + strand, within ybfP at 714.986 kb on + strand, within ybfP at 714.987 kb on - strand, within ybfP at 714.987 kb on - strand, within ybfP at 714.993 kb on - strand, within ybfP at 714.994 kb on - strand, within ybfP at 714.997 kb on + strand, within ybfP at 714.997 kb on + strand, within ybfP at 715.019 kb on + strand, within ybfP at 715.052 kb on - strand, within ybfP at 715.067 kb on + strand, within ybfP at 715.068 kb on + strand, within ybfP at 715.158 kb on - strand at 715.159 kb on - strand at 715.159 kb on - strand at 715.169 kb on - strand at 715.169 kb on - strand at 715.175 kb on - strand at 715.175 kb on - strand at 715.207 kb on + strand at 715.262 kb on - strand, within ybfG at 715.262 kb on - strand, within ybfG at 715.264 kb on + strand, within ybfG at 715.272 kb on + strand, within ybfG at 715.272 kb on - strand, within ybfG at 715.272 kb on - strand, within ybfG at 715.287 kb on - strand, within ybfG at 715.305 kb on - strand, within ybfG at 715.305 kb on - strand, within ybfG at 715.431 kb on - strand, within ybfG at 715.450 kb on + strand, within ybfG at 715.468 kb on - strand, within ybfG at 715.469 kb on + strand, within ybfG at 715.469 kb on + strand, within ybfG at 715.477 kb on - strand, within ybfG at 715.482 kb on - strand, within ybfG at 715.513 kb on + strand, within ybfG at 715.542 kb on - strand, within ybfG at 715.569 kb on + strand, within ybfG at 715.587 kb on - strand, within ybfG at 715.598 kb on - strand, within ybfG at 715.598 kb on - strand, within ybfG at 715.606 kb on - strand, within ybfG at 715.607 kb on - strand, within ybfG at 715.608 kb on - strand, within ybfG at 715.611 kb on - strand, within ybfG at 715.611 kb on - strand, within ybfG at 715.611 kb on - strand, within ybfG at 715.611 kb on - strand, within ybfG at 715.618 kb on + strand, within ybfG at 715.633 kb on + strand, within ybfG at 715.642 kb on - strand, within ybfG at 715.647 kb on - strand, within ybfG at 715.649 kb on - strand, within ybfG at 715.654 kb on - strand, within ybfG at 715.667 kb on + strand, within ybfG at 715.678 kb on + strand, within ybfG at 715.694 kb on + strand, within ybfG at 715.694 kb on + strand, within ybfG at 715.724 kb on + strand, within ybfG at 715.724 kb on + strand, within ybfG at 715.741 kb on - strand, within ybfG at 715.743 kb on - strand, within ybfG at 715.749 kb on - strand, within ybfG at 715.749 kb on - strand, within ybfG at 715.761 kb on + strand at 715.761 kb on + strand at 715.761 kb on + strand at 715.761 kb on + strand at 715.761 kb on + strand at 715.761 kb on + strand at 715.796 kb on + strand at 715.796 kb on + strand at 715.804 kb on - strand at 715.804 kb on - strand at 715.804 kb on - strand at 715.820 kb on + strand at 715.828 kb on + strand at 715.830 kb on + strand at 715.830 kb on + strand at 715.830 kb on + strand at 715.833 kb on + strand at 715.834 kb on + strand at 715.836 kb on - strand at 715.838 kb on + strand at 715.841 kb on + strand at 715.846 kb on - strand at 715.846 kb on - strand at 715.846 kb on - strand at 715.848 kb on + strand at 715.850 kb on + strand at 715.930 kb on - strand at 715.949 kb on + strand at 715.962 kb on - strand, within ybfI at 715.964 kb on - strand, within ybfI at 715.970 kb on - strand, within ybfI at 715.998 kb on + strand, within ybfI at 715.999 kb on + strand, within ybfI at 716.007 kb on + strand, within ybfI at 716.007 kb on + strand, within ybfI at 716.007 kb on + strand, within ybfI at 716.007 kb on - strand, within ybfI at 716.007 kb on - strand, within ybfI at 716.007 kb on - strand, within ybfI at 716.009 kb on + strand, within ybfI at 716.017 kb on - strand, within ybfI at 716.030 kb on + strand, within ybfI at 716.050 kb on + strand, within ybfI at 716.062 kb on + strand, within ybfI at 716.069 kb on + strand, within ybfI at 716.069 kb on + strand, within ybfI at 716.069 kb on + strand, within ybfI at 716.069 kb on + strand, within ybfI at 716.077 kb on + strand, within ybfI at 716.077 kb on - strand, within ybfI at 716.077 kb on - strand, within ybfI at 716.077 kb on - strand, within ybfI at 716.083 kb on - strand at 716.085 kb on - strand at 716.085 kb on - strand at 716.085 kb on - strand at 716.085 kb on - strand at 716.090 kb on - strand at 716.101 kb on + strand at 716.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_2_mouse_1_Cecum_40 hr remove 713,655 - pgm b0688 0.53 -2.4 713,777 + pgm b0688 0.61 -2.6 713,784 - pgm b0688 0.61 -1.5 713,863 - pgm b0688 0.66 -1.6 713,915 + pgm b0688 0.69 -4.3 713,955 + pgm b0688 0.72 -3.4 714,076 + pgm b0688 0.79 -2.2 714,206 + pgm b0688 0.87 -2.5 714,260 + -0.6 714,260 + -2.6 714,309 - -1.2 714,599 + -0.6 714,653 - +0.8 714,655 + +0.4 714,659 + -0.8 714,659 + -3.5 714,667 - +1.1 714,689 - ybfP b0689 0.11 +0.7 714,689 - ybfP b0689 0.11 -0.0 714,691 + ybfP b0689 0.11 +1.6 714,769 - ybfP b0689 0.27 +2.1 714,769 - ybfP b0689 0.27 -0.3 714,842 + ybfP b0689 0.42 -0.5 714,842 + ybfP b0689 0.42 -0.9 714,864 + ybfP b0689 0.46 -0.3 714,884 + ybfP b0689 0.50 +1.0 714,884 + ybfP b0689 0.50 -5.6 714,949 - ybfP b0689 0.63 +2.0 714,949 - ybfP b0689 0.63 +1.3 714,951 - ybfP b0689 0.64 -0.2 714,951 - ybfP b0689 0.64 -0.8 714,952 - ybfP b0689 0.64 -0.1 714,974 + ybfP b0689 0.68 +0.4 714,979 + ybfP b0689 0.69 +0.6 714,986 + ybfP b0689 0.71 +0.6 714,986 + ybfP b0689 0.71 +2.1 714,986 + ybfP b0689 0.71 -0.1 714,986 + ybfP b0689 0.71 -1.7 714,987 - ybfP b0689 0.71 +1.3 714,987 - ybfP b0689 0.71 +1.2 714,993 - ybfP b0689 0.72 -3.8 714,994 - ybfP b0689 0.73 -3.8 714,997 + ybfP b0689 0.73 -1.0 714,997 + ybfP b0689 0.73 -2.3 715,019 + ybfP b0689 0.78 +0.0 715,052 - ybfP b0689 0.84 -0.3 715,067 + ybfP b0689 0.87 -0.3 715,068 + ybfP b0689 0.87 +1.1 715,158 - -1.2 715,159 - -0.7 715,159 - +0.3 715,169 - -1.9 715,169 - -1.3 715,175 - -4.8 715,175 - -1.9 715,207 + -4.1 715,262 - ybfG b0691 0.14 -1.5 715,262 - ybfG b0691 0.14 -3.0 715,264 + ybfG b0691 0.14 +1.3 715,272 + ybfG b0691 0.16 +2.3 715,272 - ybfG b0691 0.16 +0.4 715,272 - ybfG b0691 0.16 +0.8 715,287 - ybfG b0691 0.18 +1.3 715,305 - ybfG b0691 0.21 -1.8 715,305 - ybfG b0691 0.21 +1.5 715,431 - ybfG b0691 0.40 +0.3 715,450 + ybfG b0691 0.43 +2.3 715,468 - ybfG b0691 0.46 -0.3 715,469 + ybfG b0691 0.46 +1.9 715,469 + ybfG b0691 0.46 -1.5 715,477 - ybfG b0691 0.47 +0.3 715,482 - ybfG b0691 0.48 -0.9 715,513 + ybfG b0691 0.53 -3.9 715,542 - ybfG b0691 0.57 -1.1 715,569 + ybfG b0691 0.61 +0.2 715,587 - ybfG b0691 0.64 -0.2 715,598 - ybfG b0691 0.66 +0.5 715,598 - ybfG b0691 0.66 +1.4 715,606 - ybfG b0691 0.67 +0.5 715,607 - ybfG b0691 0.67 -1.2 715,608 - ybfG b0691 0.67 +1.1 715,611 - ybfG b0691 0.68 -1.2 715,611 - ybfG b0691 0.68 +0.7 715,611 - ybfG b0691 0.68 -3.6 715,611 - ybfG b0691 0.68 -4.0 715,618 + ybfG b0691 0.69 +0.1 715,633 + ybfG b0691 0.71 -0.3 715,642 - ybfG b0691 0.73 +0.6 715,647 - ybfG b0691 0.73 +0.3 715,649 - ybfG b0691 0.74 -0.1 715,654 - ybfG b0691 0.74 -1.2 715,667 + ybfG b0691 0.76 -0.1 715,678 + ybfG b0691 0.78 -0.7 715,694 + ybfG b0691 0.80 +0.6 715,694 + ybfG b0691 0.80 -1.4 715,724 + ybfG b0691 0.85 -4.0 715,724 + ybfG b0691 0.85 +2.0 715,741 - ybfG b0691 0.88 -0.9 715,743 - ybfG b0691 0.88 -1.5 715,749 - ybfG b0691 0.89 +2.3 715,749 - ybfG b0691 0.89 -0.7 715,761 + -4.3 715,761 + -2.0 715,761 + +0.2 715,761 + +2.0 715,761 + +0.6 715,761 + +1.2 715,796 + -2.5 715,796 + +1.3 715,804 - +2.3 715,804 - -0.0 715,804 - -0.9 715,820 + -0.0 715,828 + +0.8 715,830 + -3.1 715,830 + -0.8 715,830 + -3.5 715,833 + +1.2 715,834 + -1.1 715,836 - -0.3 715,838 + +0.9 715,841 + -0.3 715,846 - -0.3 715,846 - +1.3 715,846 - +0.2 715,848 + +1.9 715,850 + +0.6 715,930 - -0.2 715,949 + +2.3 715,962 - ybfI b4636 0.12 +0.3 715,964 - ybfI b4636 0.13 +0.5 715,970 - ybfI b4636 0.17 -0.7 715,998 + ybfI b4636 0.36 +2.2 715,999 + ybfI b4636 0.37 -1.3 716,007 + ybfI b4636 0.42 -0.6 716,007 + ybfI b4636 0.42 +1.6 716,007 + ybfI b4636 0.42 -3.1 716,007 - ybfI b4636 0.42 -1.2 716,007 - ybfI b4636 0.42 -2.3 716,007 - ybfI b4636 0.42 +0.3 716,009 + ybfI b4636 0.43 +1.1 716,017 - ybfI b4636 0.49 -0.9 716,030 + ybfI b4636 0.57 +0.3 716,050 + ybfI b4636 0.71 -3.6 716,062 + ybfI b4636 0.79 -4.1 716,069 + ybfI b4636 0.83 -3.5 716,069 + ybfI b4636 0.83 -2.7 716,069 + ybfI b4636 0.83 -3.3 716,069 + ybfI b4636 0.83 +2.1 716,077 + ybfI b4636 0.89 -0.1 716,077 - ybfI b4636 0.89 -0.6 716,077 - ybfI b4636 0.89 -3.7 716,077 - ybfI b4636 0.89 -0.3 716,083 - +0.6 716,085 - +1.2 716,085 - +1.1 716,085 - +0.4 716,085 - +2.1 716,090 - -0.1 716,101 + -3.9 716,113 + -1.3
Or see this region's nucleotide sequence