Strain Fitness in Escherichia coli BW25113 around b3003

Experiment: PBS_cage_1_mouse_2_Cecum_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_1_mouse_2_Cecum_40 hr
3,146,753	-	yghZ	b3001	0.80	+0.9
3,146,753	-	yghZ	b3001	0.80	+0.7
3,146,753	-	yghZ	b3001	0.80	-2.8
3,146,840	+	yghZ	b3001	0.88	+0.2
3,146,842	+	yghZ	b3001	0.89	-2.0
3,146,842	+	yghZ	b3001	0.89	-0.1
3,146,863	+				-0.2
3,146,863	+				+1.2
3,146,869	-				-0.0
3,146,971	-				+0.9
3,146,995	-				+0.7
3,147,027	+				-5.4
3,147,309	-	yqhA	b3002	0.63	-0.2
3,147,435	-	yqhA	b3002	0.88	-3.8
3,147,435	-	yqhA	b3002	0.88	-0.3
3,147,461	+				+0.1
3,147,526	+				+0.4
3,147,526	+				+0.8
3,147,531	-				-0.6
3,147,538	+				+0.0
3,147,538	+				+1.2
3,147,540	+				-4.0
3,147,540	+				-5.0
3,147,650	-				-2.1
3,147,713	+				-2.1
3,147,713	+				+1.5
3,147,713	+				-3.0
3,147,723	+				-0.4
3,147,783	-	yghA	b3003	0.11	-0.8
3,147,865	-	yghA	b3003	0.20	-0.1
3,147,865	-	yghA	b3003	0.20	-0.5
3,147,981	+	yghA	b3003	0.34	+0.7
3,147,993	-	yghA	b3003	0.35	-5.6
3,147,993	-	yghA	b3003	0.35	+2.3
3,148,064	-	yghA	b3003	0.43	+1.6
3,148,064	-	yghA	b3003	0.43	+1.6
3,148,078	-	yghA	b3003	0.45	+2.4
3,148,175	+	yghA	b3003	0.55	-0.3
3,148,175	+	yghA	b3003	0.55	-4.4
3,148,175	+	yghA	b3003	0.55	+0.4
3,148,175	+	yghA	b3003	0.55	-1.1
3,148,183	-	yghA	b3003	0.56	+1.3
3,148,183	-	yghA	b3003	0.56	+0.4
3,148,226	+	yghA	b3003	0.61	+2.3
3,148,250	-	yghA	b3003	0.64	+1.4
3,148,259	-	yghA	b3003	0.65	-0.7
3,148,282	-	yghA	b3003	0.68	+0.5
3,148,282	-	yghA	b3003	0.68	+0.0
3,148,299	+	yghA	b3003	0.69	+0.4
3,148,299	+	yghA	b3003	0.69	+0.2
3,148,371	+	yghA	b3003	0.78	-1.4
3,148,384	-	yghA	b3003	0.79	+0.2
3,148,384	-	yghA	b3003	0.79	+1.4
3,148,386	+	yghA	b3003	0.79	-0.1
3,148,386	+	yghA	b3003	0.79	+1.8
3,148,387	-	yghA	b3003	0.79	+1.0
3,148,387	-	yghA	b3003	0.79	-0.4
3,148,515	+				-0.2
3,148,519	+				+0.6
3,148,540	-				+0.7
3,148,552	-				+0.1
3,148,611	-				+0.3
3,148,694	+				+0.9
3,148,700	-				-2.3
3,148,758	-				+0.3
3,148,758	-				-0.6
3,148,875	-				+0.4
3,148,906	+	exbD	b3005	0.15	+0.8
3,148,936	-	exbD	b3005	0.23	+0.5
3,148,992	-	exbD	b3005	0.36	+0.8
3,149,036	+	exbD	b3005	0.46	-4.1
3,149,092	+	exbD	b3005	0.59	-0.8
3,149,120	-				-2.3
3,149,120	-	exbD	b3005	0.66	-3.0
3,149,131	+	exbD	b3005	0.68	+0.2
3,149,131	+	exbD	b3005	0.68	-0.2
3,149,208	+	exbD	b3005	0.86	+0.4
3,149,377	+	exbB	b3006	0.14	-4.8
3,149,377	+	exbB	b3006	0.14	+0.5
3,149,380	+	exbB	b3006	0.15	+1.1
3,149,396	-	exbB	b3006	0.17	+0.7
3,149,448	-	exbB	b3006	0.24	-0.9
3,149,501	+	exbB	b3006	0.31	-0.3
3,149,508	+	exbB	b3006	0.32	+0.4
3,149,543	-	exbB	b3006	0.37	-0.0
3,149,553	-	exbB	b3006	0.38	-2.0
3,149,554	+	exbB	b3006	0.38	+0.3
3,149,564	+	exbB	b3006	0.40	+1.5