Experiment: PBS_cage_1_mouse_1_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt perR and insN are separated by 95 nucleotides insN and insI-1 are separated by 67 nucleotides
b0254: perR - CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 268,513 to 269,406
perR
b4587: insN - no description, at 269,502 to 269,759
insN
b0256: insI-1 - CP4-6 prophage; IS30 transposase (NCBI), at 269,827 to 270,978
insI-1
Position (kb) 269
270 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 268.538 kb on - strand at 268.584 kb on - strand at 268.591 kb on - strand at 268.591 kb on - strand at 268.623 kb on - strand, within perR at 268.645 kb on - strand, within perR at 268.657 kb on - strand, within perR at 268.809 kb on - strand, within perR at 268.853 kb on + strand, within perR at 268.873 kb on + strand, within perR at 268.873 kb on + strand, within perR at 268.928 kb on + strand, within perR at 268.967 kb on - strand, within perR at 268.967 kb on - strand, within perR at 268.971 kb on - strand, within perR at 268.971 kb on - strand, within perR at 268.993 kb on - strand, within perR at 269.108 kb on + strand, within perR at 269.108 kb on + strand, within perR at 269.116 kb on - strand, within perR at 269.116 kb on - strand, within perR at 269.116 kb on - strand, within perR at 269.131 kb on + strand, within perR at 269.157 kb on - strand, within perR at 269.199 kb on + strand, within perR at 269.199 kb on + strand, within perR at 269.302 kb on + strand, within perR at 269.458 kb on + strand at 269.468 kb on + strand at 269.468 kb on + strand at 269.486 kb on - strand at 269.528 kb on + strand, within insN at 269.536 kb on - strand, within insN at 269.564 kb on + strand, within insN at 269.564 kb on + strand, within insN at 269.564 kb on + strand, within insN at 269.564 kb on + strand, within insN at 269.572 kb on - strand, within insN at 269.572 kb on - strand, within insN at 269.596 kb on - strand, within insN at 269.596 kb on - strand, within insN at 269.598 kb on + strand, within insN
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_1_mouse_1_Cecum_40 hr remove 268,538 - +0.1 268,584 - +2.0 268,591 - -2.7 268,591 - +1.0 268,623 - perR b0254 0.12 -0.8 268,645 - perR b0254 0.15 -0.4 268,657 - perR b0254 0.16 +0.2 268,809 - perR b0254 0.33 +1.9 268,853 + perR b0254 0.38 -0.8 268,873 + perR b0254 0.40 -1.1 268,873 + perR b0254 0.40 -0.1 268,928 + perR b0254 0.46 -1.5 268,967 - perR b0254 0.51 +0.9 268,967 - perR b0254 0.51 -0.1 268,971 - perR b0254 0.51 -3.6 268,971 - perR b0254 0.51 -0.9 268,993 - perR b0254 0.54 -5.4 269,108 + perR b0254 0.67 +0.9 269,108 + perR b0254 0.67 +1.8 269,116 - perR b0254 0.67 +0.9 269,116 - perR b0254 0.67 -1.7 269,116 - perR b0254 0.67 -2.2 269,131 + perR b0254 0.69 -4.2 269,157 - perR b0254 0.72 -4.3 269,199 + perR b0254 0.77 +0.3 269,199 + perR b0254 0.77 -4.5 269,302 + perR b0254 0.88 -0.7 269,458 + +1.7 269,468 + +2.0 269,468 + -3.9 269,486 - -2.1 269,528 + insN b4587 0.10 +0.8 269,536 - insN b4587 0.13 +1.5 269,564 + insN b4587 0.24 +1.3 269,564 + insN b4587 0.24 -0.5 269,564 + insN b4587 0.24 +0.7 269,564 + insN b4587 0.24 +2.0 269,572 - insN b4587 0.27 +3.3 269,572 - insN b4587 0.27 +0.1 269,596 - insN b4587 0.36 +2.3 269,596 - insN b4587 0.36 -1.7 269,598 + insN b4587 0.37 +0.0
Or see this region's nucleotide sequence