Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03085 and PS417_03090 are separated by 1 nucleotides PS417_03090 and PS417_03095 are separated by 10 nucleotides PS417_03095 and PS417_03100 overlap by 4 nucleotides
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
PS417_03090: PS417_03090 - type II secretion system protein F, at 709,214 to 710,095
_03090
PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377
_03095
PS417_03100: PS417_03100 - pilus assembly protein, at 711,374 to 712,567
_03100
Position (kb) 710
711
712 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 709.323 kb on + strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.348 kb on - strand, within PS417_03090 at 709.384 kb on - strand, within PS417_03090 at 709.549 kb on - strand, within PS417_03090 at 709.741 kb on + strand at 709.742 kb on - strand, within PS417_03090 at 709.776 kb on + strand, within PS417_03090 at 709.777 kb on - strand, within PS417_03090 at 710.208 kb on - strand at 710.218 kb on + strand at 710.218 kb on + strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.460 kb on + strand, within PS417_03095 at 710.460 kb on + strand, within PS417_03095 at 710.461 kb on - strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.599 kb on - strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.197 kb on - strand, within PS417_03095 at 711.289 kb on + strand at 711.289 kb on + strand at 711.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 709,323 + PS417_03090 0.12 +2.8 709,324 - PS417_03090 0.12 +4.3 709,324 - PS417_03090 0.12 -0.1 709,324 - PS417_03090 0.12 +1.7 709,348 - PS417_03090 0.15 +0.5 709,384 - PS417_03090 0.19 +1.0 709,549 - PS417_03090 0.38 +1.7 709,741 + +0.9 709,742 - PS417_03090 0.60 +0.7 709,776 + PS417_03090 0.64 +0.7 709,777 - PS417_03090 0.64 +0.0 710,208 - +1.3 710,218 + -1.1 710,218 + +0.6 710,219 - +0.7 710,219 - +0.5 710,219 - +0.5 710,219 - +1.5 710,219 - +0.8 710,219 - +0.2 710,460 + PS417_03095 0.28 +1.4 710,460 + PS417_03095 0.28 -0.8 710,461 - PS417_03095 0.28 -0.7 710,598 + PS417_03095 0.39 +0.7 710,598 + PS417_03095 0.39 +0.7 710,598 + PS417_03095 0.39 +2.0 710,598 + PS417_03095 0.39 +3.8 710,599 - PS417_03095 0.39 +1.5 711,185 + PS417_03095 0.85 +1.2 711,185 + PS417_03095 0.85 +0.5 711,185 + PS417_03095 0.85 +1.0 711,186 - PS417_03095 0.85 +1.3 711,186 - PS417_03095 0.85 +3.9 711,197 - PS417_03095 0.86 +0.7 711,289 + +1.8 711,289 + +1.0 711,290 - +0.6
Or see this region's nucleotide sequence