Strain Fitness in Pseudomonas simiae WCS417 around PS417_28385

Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28375 and PS417_28380 overlap by 4 nucleotidesPS417_28380 and PS417_28385 are separated by 12 nucleotidesPS417_28385 and PS417_28390 are separated by 185 nucleotidesPS417_28390 and PS417_28395 are separated by 10 nucleotides PS417_28375: PS417_28375 - membrane protein, at 6,124,641 to 6,125,675 _28375 PS417_28380: PS417_28380 - protease, at 6,125,672 to 6,126,658 _28380 PS417_28385: PS417_28385 - membrane protein, at 6,126,671 to 6,128,575 _28385 PS417_28390: PS417_28390 - CDP-alcohol phosphatidyltransferase, at 6,128,761 to 6,129,384 _28390 PS417_28395: PS417_28395 - hypothetical protein, at 6,129,395 to 6,131,143 _28395 Position (kb) 6126 6127 6128 6129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6125.796 kb on + strand, within PS417_28380at 6125.796 kb on + strand, within PS417_28380at 6125.796 kb on + strand, within PS417_28380at 6125.797 kb on - strand, within PS417_28380at 6125.797 kb on - strand, within PS417_28380at 6125.817 kb on + strand, within PS417_28380at 6125.829 kb on + strand, within PS417_28380at 6126.075 kb on + strand, within PS417_28380at 6126.075 kb on + strand, within PS417_28380at 6126.076 kb on - strand, within PS417_28380at 6126.079 kb on + strand, within PS417_28380at 6126.079 kb on + strand, within PS417_28380at 6126.080 kb on - strand, within PS417_28380at 6126.080 kb on - strand, within PS417_28380at 6126.080 kb on - strand, within PS417_28380at 6126.312 kb on + strand, within PS417_28380at 6126.313 kb on - strand, within PS417_28380at 6126.313 kb on - strand, within PS417_28380at 6126.563 kb on - strandat 6126.716 kb on - strandat 6126.725 kb on + strandat 6126.725 kb on + strandat 6126.725 kb on + strandat 6126.772 kb on + strandat 6126.773 kb on - strandat 6126.773 kb on - strandat 6126.816 kb on + strandat 6127.045 kb on - strand, within PS417_28385at 6127.045 kb on - strand, within PS417_28385at 6127.045 kb on - strand, within PS417_28385at 6127.256 kb on + strand, within PS417_28385at 6127.270 kb on + strand, within PS417_28385at 6127.271 kb on - strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.272 kb on + strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.273 kb on - strand, within PS417_28385at 6127.505 kb on + strand, within PS417_28385at 6127.602 kb on + strand, within PS417_28385at 6127.701 kb on + strand, within PS417_28385at 6127.701 kb on + strand, within PS417_28385at 6127.701 kb on + strand, within PS417_28385at 6127.702 kb on - strand, within PS417_28385at 6127.702 kb on - strand, within PS417_28385at 6127.702 kb on - strand, within PS417_28385at 6127.705 kb on + strand, within PS417_28385at 6127.705 kb on + strand, within PS417_28385at 6127.705 kb on + strand, within PS417_28385at 6127.706 kb on - strand, within PS417_28385at 6127.874 kb on + strand, within PS417_28385at 6127.874 kb on + strand, within PS417_28385at 6127.875 kb on - strand, within PS417_28385at 6127.994 kb on - strand, within PS417_28385at 6128.386 kb on + strandat 6128.386 kb on + strandat 6128.387 kb on - strandat 6128.602 kb on - strandat 6128.641 kb on + strandat 6128.642 kb on - strandat 6128.642 kb on - strandat 6128.658 kb on + strandat 6128.659 kb on - strandat 6128.659 kb on - strandat 6128.773 kb on + strandat 6128.774 kb on - strandat 6129.029 kb on - strand, within PS417_28390at 6129.228 kb on - strand, within PS417_28390at 6129.320 kb on - strand, within PS417_28390at 6129.320 kb on - strand, within PS417_28390

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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6,125,796 + PS417_28380 0.13 +0.7
6,125,796 + PS417_28380 0.13 +0.4
6,125,796 + PS417_28380 0.13 -1.7
6,125,797 - PS417_28380 0.13 +1.3
6,125,797 - PS417_28380 0.13 +0.1
6,125,817 + PS417_28380 0.15 -0.6
6,125,829 + PS417_28380 0.16 +2.2
6,126,075 + PS417_28380 0.41 -0.4
6,126,075 + PS417_28380 0.41 -0.5
6,126,076 - PS417_28380 0.41 -0.4
6,126,079 + PS417_28380 0.41 -0.7
6,126,079 + PS417_28380 0.41 +3.6
6,126,080 - PS417_28380 0.41 -0.0
6,126,080 - PS417_28380 0.41 +1.1
6,126,080 - PS417_28380 0.41 +0.2
6,126,312 + PS417_28380 0.65 -0.5
6,126,313 - PS417_28380 0.65 -1.1
6,126,313 - PS417_28380 0.65 +1.7
6,126,563 - -0.4
6,126,716 - +0.3
6,126,725 + +0.5
6,126,725 + +1.5
6,126,725 + +0.8
6,126,772 + +0.3
6,126,773 - -0.4
6,126,773 - +1.3
6,126,816 + +0.5
6,127,045 - PS417_28385 0.20 -0.8
6,127,045 - PS417_28385 0.20 -1.2
6,127,045 - PS417_28385 0.20 -0.6
6,127,256 + PS417_28385 0.31 -0.6
6,127,270 + PS417_28385 0.31 +0.0
6,127,271 - PS417_28385 0.31 +0.3
6,127,272 + PS417_28385 0.32 +1.0
6,127,272 + PS417_28385 0.32 +0.3
6,127,272 + PS417_28385 0.32 +0.1
6,127,272 + PS417_28385 0.32 +0.6
6,127,273 - PS417_28385 0.32 +0.3
6,127,273 - PS417_28385 0.32 +0.0
6,127,273 - PS417_28385 0.32 +0.8
6,127,273 - PS417_28385 0.32 +2.0
6,127,273 - PS417_28385 0.32 +0.9
6,127,505 + PS417_28385 0.44 +1.0
6,127,602 + PS417_28385 0.49 -0.4
6,127,701 + PS417_28385 0.54 -1.7
6,127,701 + PS417_28385 0.54 -1.2
6,127,701 + PS417_28385 0.54 -0.5
6,127,702 - PS417_28385 0.54 +0.5
6,127,702 - PS417_28385 0.54 -0.4
6,127,702 - PS417_28385 0.54 +0.2
6,127,705 + PS417_28385 0.54 -0.9
6,127,705 + PS417_28385 0.54 -0.0
6,127,705 + PS417_28385 0.54 +0.4
6,127,706 - PS417_28385 0.54 -0.3
6,127,874 + PS417_28385 0.63 -0.1
6,127,874 + PS417_28385 0.63 -0.2
6,127,875 - PS417_28385 0.63 -0.3
6,127,994 - PS417_28385 0.69 +0.1
6,128,386 + -0.2
6,128,386 + -0.3
6,128,387 - +1.6
6,128,602 - +0.1
6,128,641 + -1.0
6,128,642 - +1.0
6,128,642 - +1.6
6,128,658 + +0.6
6,128,659 - -1.0
6,128,659 - -1.3
6,128,773 + +0.4
6,128,774 - -0.7
6,129,029 - PS417_28390 0.43 -2.3
6,129,228 - PS417_28390 0.75 +0.1
6,129,320 - PS417_28390 0.90 +3.2
6,129,320 - PS417_28390 0.90 +0.9

Or see this region's nucleotide sequence