Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27650 and PS417_27655 are separated by 177 nucleotides PS417_27655 and PS417_27660 are separated by 149 nucleotides
PS417_27650: PS417_27650 - chemotaxis protein, at 5,961,574 to 5,963,550
_27650
PS417_27655: PS417_27655 - LysR family transcriptional regulator, at 5,963,728 to 5,964,648
_27655
PS417_27660: PS417_27660 - multidrug transporter, at 5,964,798 to 5,966,201
_27660
Position (kb) 5963
5964
5965 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5962.989 kb on - strand at 5963.001 kb on - strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.034 kb on - strand, within PS417_27650 at 5963.244 kb on - strand, within PS417_27650 at 5963.469 kb on + strand at 5963.515 kb on + strand at 5963.516 kb on - strand at 5963.840 kb on + strand, within PS417_27655 at 5963.840 kb on + strand, within PS417_27655 at 5963.843 kb on + strand, within PS417_27655 at 5963.844 kb on - strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.168 kb on - strand, within PS417_27655 at 5964.201 kb on - strand, within PS417_27655 at 5964.393 kb on + strand, within PS417_27655 at 5964.553 kb on - strand, within PS417_27655 at 5964.624 kb on - strand at 5964.662 kb on - strand at 5964.662 kb on - strand at 5964.681 kb on - strand at 5964.787 kb on - strand at 5964.966 kb on + strand, within PS417_27660 at 5965.317 kb on + strand, within PS417_27660 at 5965.317 kb on + strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.318 kb on - strand, within PS417_27660 at 5965.434 kb on + strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.452 kb on - strand, within PS417_27660 at 5965.456 kb on - strand at 5965.456 kb on - strand, within PS417_27660 at 5965.503 kb on + strand, within PS417_27660 at 5965.548 kb on + strand, within PS417_27660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,962,989 - -0.0 5,963,001 - PS417_27650 0.72 -0.2 5,963,033 + PS417_27650 0.74 +0.1 5,963,033 + PS417_27650 0.74 +0.9 5,963,033 + PS417_27650 0.74 +0.3 5,963,033 + PS417_27650 0.74 -1.1 5,963,033 + PS417_27650 0.74 +1.0 5,963,033 + PS417_27650 0.74 -0.2 5,963,034 - PS417_27650 0.74 -2.6 5,963,244 - PS417_27650 0.84 +2.6 5,963,469 + +1.4 5,963,515 + +1.1 5,963,516 - +1.2 5,963,840 + PS417_27655 0.12 -0.6 5,963,840 + PS417_27655 0.12 -1.0 5,963,843 + PS417_27655 0.12 -0.4 5,963,844 - PS417_27655 0.13 -1.4 5,964,163 + PS417_27655 0.47 +0.7 5,964,163 + +0.6 5,964,163 + PS417_27655 0.47 +0.2 5,964,163 + PS417_27655 0.47 +1.1 5,964,167 + PS417_27655 0.48 -0.9 5,964,167 + PS417_27655 0.48 +0.6 5,964,168 - PS417_27655 0.48 +4.4 5,964,201 - PS417_27655 0.51 +1.0 5,964,393 + PS417_27655 0.72 -0.2 5,964,553 - PS417_27655 0.90 +0.9 5,964,624 - -0.8 5,964,662 - -1.2 5,964,662 - +0.7 5,964,681 - -2.0 5,964,787 - +0.6 5,964,966 + PS417_27660 0.12 -0.2 5,965,317 + PS417_27660 0.37 +0.4 5,965,317 + PS417_27660 0.37 +0.6 5,965,318 - PS417_27660 0.37 +0.2 5,965,318 - PS417_27660 0.37 +0.1 5,965,318 - PS417_27660 0.37 +1.0 5,965,434 + PS417_27660 0.45 -0.1 5,965,452 - PS417_27660 0.47 -0.0 5,965,452 - PS417_27660 0.47 -1.6 5,965,452 - PS417_27660 0.47 -0.5 5,965,456 - +0.6 5,965,456 - PS417_27660 0.47 +0.6 5,965,503 + PS417_27660 0.50 +0.7 5,965,548 + PS417_27660 0.53 -0.4
Or see this region's nucleotide sequence