Strain Fitness in Pseudomonas simiae WCS417 around PS417_24505

Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24500 and PS417_24505 are separated by 48 nucleotidesPS417_24505 and PS417_24510 are separated by 160 nucleotidesPS417_24510 and PS417_24515 are separated by 89 nucleotides PS417_24500: PS417_24500 - DEAD/DEAH box helicase, at 5,317,560 to 5,318,894 _24500 PS417_24505: PS417_24505 - membrane protein, at 5,318,943 to 5,319,839 _24505 PS417_24510: PS417_24510 - AsnC family transcriptional regulator, at 5,320,000 to 5,320,461 _24510 PS417_24515: PS417_24515 - acyl carrier protein, at 5,320,551 to 5,320,727 _24515 Position (kb) 5318 5319 5320Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 5318.378 kb on - strand, within PS417_24500at 5318.578 kb on + strand, within PS417_24500at 5318.896 kb on + strandat 5318.930 kb on - strandat 5318.944 kb on + strandat 5318.945 kb on - strandat 5318.949 kb on + strandat 5318.950 kb on - strandat 5319.094 kb on + strand, within PS417_24505at 5319.094 kb on + strand, within PS417_24505at 5319.094 kb on + strand, within PS417_24505at 5319.094 kb on + strand, within PS417_24505at 5319.094 kb on + strand, within PS417_24505at 5319.095 kb on - strand, within PS417_24505at 5319.100 kb on + strand, within PS417_24505at 5319.100 kb on + strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.101 kb on - strand, within PS417_24505at 5319.139 kb on + strand, within PS417_24505at 5319.139 kb on + strand, within PS417_24505at 5319.139 kb on + strand, within PS417_24505at 5319.140 kb on - strand, within PS417_24505at 5319.145 kb on + strand, within PS417_24505at 5319.145 kb on + strand, within PS417_24505at 5319.145 kb on + strand, within PS417_24505at 5319.145 kb on + strand, within PS417_24505at 5319.145 kb on + strand, within PS417_24505at 5319.146 kb on - strandat 5319.146 kb on - strand, within PS417_24505at 5319.146 kb on - strand, within PS417_24505at 5319.146 kb on - strand, within PS417_24505at 5319.146 kb on - strand, within PS417_24505at 5319.146 kb on - strand, within PS417_24505at 5319.146 kb on - strand, within PS417_24505at 5319.184 kb on + strand, within PS417_24505at 5319.185 kb on - strand, within PS417_24505at 5319.404 kb on + strand, within PS417_24505at 5319.404 kb on + strand, within PS417_24505at 5319.404 kb on + strand, within PS417_24505at 5319.404 kb on + strand, within PS417_24505at 5319.404 kb on + strand, within PS417_24505at 5319.405 kb on - strand, within PS417_24505at 5319.405 kb on - strand, within PS417_24505at 5319.474 kb on - strand, within PS417_24505at 5319.491 kb on - strand, within PS417_24505at 5319.498 kb on + strand, within PS417_24505at 5319.498 kb on + strandat 5319.498 kb on + strand, within PS417_24505at 5319.498 kb on + strand, within PS417_24505at 5319.499 kb on - strand, within PS417_24505at 5319.499 kb on - strand, within PS417_24505at 5319.499 kb on - strand, within PS417_24505at 5319.499 kb on - strand, within PS417_24505at 5319.764 kb on - strandat 5319.764 kb on - strandat 5319.764 kb on - strandat 5319.767 kb on + strandat 5319.768 kb on - strandat 5319.768 kb on - strandat 5319.784 kb on + strandat 5319.784 kb on + strandat 5319.784 kb on + strandat 5319.785 kb on - strandat 5319.850 kb on + strandat 5319.851 kb on - strandat 5319.871 kb on + strandat 5319.871 kb on + strandat 5319.871 kb on + strandat 5319.876 kb on + strandat 5319.898 kb on + strandat 5319.928 kb on - strandat 5319.946 kb on + strandat 5319.957 kb on - strandat 5320.009 kb on + strandat 5320.009 kb on + strandat 5320.009 kb on + strandat 5320.058 kb on - strand, within PS417_24510at 5320.216 kb on - strand, within PS417_24510at 5320.216 kb on - strand, within PS417_24510at 5320.238 kb on - strand, within PS417_24510at 5320.326 kb on + strand, within PS417_24510at 5320.327 kb on - strand, within PS417_24510at 5320.542 kb on + strandat 5320.542 kb on + strandat 5320.542 kb on + strandat 5320.542 kb on + strandat 5320.542 kb on + strandat 5320.542 kb on + strandat 5320.542 kb on + strandat 5320.543 kb on - strandat 5320.543 kb on - strandat 5320.765 kb on - strandat 5320.821 kb on + strandat 5320.822 kb on - strandat 5320.825 kb on + strandat 5320.826 kb on - strandat 5320.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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5,318,378 - PS417_24500 0.61 -0.0
5,318,578 + PS417_24500 0.76 -2.3
5,318,896 + -0.9
5,318,930 - +0.3
5,318,944 + +1.6
5,318,945 - -0.7
5,318,949 + -3.6
5,318,950 - +1.0
5,319,094 + PS417_24505 0.17 -1.0
5,319,094 + PS417_24505 0.17 +0.6
5,319,094 + PS417_24505 0.17 -0.8
5,319,094 + PS417_24505 0.17 -3.9
5,319,094 + PS417_24505 0.17 -3.0
5,319,095 - PS417_24505 0.17 -1.9
5,319,100 + PS417_24505 0.18 -1.4
5,319,100 + PS417_24505 0.18 -1.3
5,319,101 - PS417_24505 0.18 -3.7
5,319,101 - PS417_24505 0.18 -1.4
5,319,101 - PS417_24505 0.18 -0.0
5,319,101 - PS417_24505 0.18 -1.8
5,319,101 - PS417_24505 0.18 -1.4
5,319,101 - PS417_24505 0.18 -0.9
5,319,101 - PS417_24505 0.18 -1.0
5,319,101 - PS417_24505 0.18 -2.9
5,319,139 + PS417_24505 0.22 -3.7
5,319,139 + PS417_24505 0.22 -2.8
5,319,139 + PS417_24505 0.22 -2.5
5,319,140 - PS417_24505 0.22 -3.0
5,319,145 + PS417_24505 0.23 -2.4
5,319,145 + PS417_24505 0.23 -3.3
5,319,145 + PS417_24505 0.23 -1.4
5,319,145 + PS417_24505 0.23 -4.1
5,319,145 + PS417_24505 0.23 -0.0
5,319,146 - -0.8
5,319,146 - PS417_24505 0.23 -0.4
5,319,146 - PS417_24505 0.23 -1.8
5,319,146 - PS417_24505 0.23 -1.7
5,319,146 - PS417_24505 0.23 -2.6
5,319,146 - PS417_24505 0.23 -4.2
5,319,146 - PS417_24505 0.23 -2.3
5,319,184 + PS417_24505 0.27 -1.1
5,319,185 - PS417_24505 0.27 -0.5
5,319,404 + PS417_24505 0.51 +1.6
5,319,404 + PS417_24505 0.51 -3.0
5,319,404 + PS417_24505 0.51 -3.4
5,319,404 + PS417_24505 0.51 -3.2
5,319,404 + PS417_24505 0.51 -3.0
5,319,405 - PS417_24505 0.52 -2.8
5,319,405 - PS417_24505 0.52 -3.2
5,319,474 - PS417_24505 0.59 -3.6
5,319,491 - PS417_24505 0.61 -0.8
5,319,498 + PS417_24505 0.62 -1.7
5,319,498 + -0.8
5,319,498 + PS417_24505 0.62 -0.0
5,319,498 + PS417_24505 0.62 -3.4
5,319,499 - PS417_24505 0.62 +1.6
5,319,499 - PS417_24505 0.62 -1.8
5,319,499 - PS417_24505 0.62 -3.0
5,319,499 - PS417_24505 0.62 -2.9
5,319,764 - +0.2
5,319,764 - -1.3
5,319,764 - -5.0
5,319,767 + -2.8
5,319,768 - -3.5
5,319,768 - +0.6
5,319,784 + -4.0
5,319,784 + -0.6
5,319,784 + -1.0
5,319,785 - -1.7
5,319,850 + -1.2
5,319,851 - -1.2
5,319,871 + -1.9
5,319,871 + -0.4
5,319,871 + -2.9
5,319,876 + -0.0
5,319,898 + -2.8
5,319,928 - +3.8
5,319,946 + -2.2
5,319,957 - -0.0
5,320,009 + -0.8
5,320,009 + -0.8
5,320,009 + -3.3
5,320,058 - PS417_24510 0.13 -1.6
5,320,216 - PS417_24510 0.47 +0.9
5,320,216 - PS417_24510 0.47 +0.8
5,320,238 - PS417_24510 0.52 -0.8
5,320,326 + PS417_24510 0.71 -1.6
5,320,327 - PS417_24510 0.71 +0.1
5,320,542 + -0.6
5,320,542 + -1.9
5,320,542 + +1.4
5,320,542 + -0.2
5,320,542 + -1.8
5,320,542 + +0.3
5,320,542 + +0.9
5,320,543 - -0.9
5,320,543 - -0.1
5,320,765 - -0.1
5,320,821 + -0.6
5,320,822 - +0.6
5,320,825 + -2.8
5,320,826 - -0.7
5,320,826 - -0.0

Or see this region's nucleotide sequence