Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23835 and PS417_23840 are separated by 192 nucleotides PS417_23840 and PS417_23845 are separated by 251 nucleotides PS417_23845 and PS417_23850 overlap by 1 nucleotides
PS417_23835: PS417_23835 - hypothetical protein, at 5,159,192 to 5,159,536
_23835
PS417_23840: PS417_23840 - competence protein TfoX, at 5,159,729 to 5,160,001
_23840
PS417_23845: PS417_23845 - hemin ABC transporter ATP-binding protein, at 5,160,253 to 5,161,020
_23845
PS417_23850: PS417_23850 - ABC transporter permease, at 5,161,020 to 5,162,057
_23850
Position (kb) 5160
5161
5162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5159.338 kb on + strand, within PS417_23835 at 5159.366 kb on + strand, within PS417_23835 at 5159.456 kb on + strand, within PS417_23835 at 5159.456 kb on + strand, within PS417_23835 at 5159.456 kb on + strand, within PS417_23835 at 5159.457 kb on - strand, within PS417_23835 at 5159.610 kb on + strand at 5159.662 kb on - strand at 5159.891 kb on + strand, within PS417_23840 at 5159.891 kb on + strand, within PS417_23840 at 5159.891 kb on + strand, within PS417_23840 at 5159.891 kb on + strand, within PS417_23840 at 5159.891 kb on + strand, within PS417_23840 at 5159.892 kb on - strand, within PS417_23840 at 5159.892 kb on - strand, within PS417_23840 at 5159.892 kb on - strand, within PS417_23840 at 5159.892 kb on - strand, within PS417_23840 at 5160.025 kb on - strand at 5160.169 kb on + strand at 5160.169 kb on + strand at 5160.170 kb on - strand at 5160.170 kb on - strand at 5160.226 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.232 kb on + strand at 5160.319 kb on + strand at 5160.319 kb on + strand at 5160.320 kb on - strand at 5160.320 kb on - strand at 5160.320 kb on - strand at 5160.360 kb on + strand, within PS417_23845 at 5160.630 kb on - strand, within PS417_23845 at 5160.897 kb on + strand, within PS417_23845 at 5160.898 kb on - strand, within PS417_23845 at 5160.898 kb on - strand, within PS417_23845 at 5160.898 kb on - strand, within PS417_23845 at 5160.973 kb on + strand at 5161.038 kb on + strand at 5161.045 kb on + strand at 5161.307 kb on + strand, within PS417_23850 at 5161.307 kb on + strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.510 kb on + strand, within PS417_23850 at 5161.514 kb on + strand, within PS417_23850 at 5161.626 kb on - strand, within PS417_23850 at 5161.666 kb on + strand, within PS417_23850 at 5161.666 kb on + strand, within PS417_23850 at 5161.667 kb on - strand, within PS417_23850 at 5161.821 kb on + strand, within PS417_23850 at 5161.822 kb on - strand, within PS417_23850 at 5161.940 kb on + strand, within PS417_23850
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,159,338 + PS417_23835 0.42 -1.6 5,159,366 + PS417_23835 0.50 -1.0 5,159,456 + PS417_23835 0.77 -1.8 5,159,456 + PS417_23835 0.77 -0.2 5,159,456 + PS417_23835 0.77 -1.5 5,159,457 - PS417_23835 0.77 +0.2 5,159,610 + +0.3 5,159,662 - -0.7 5,159,891 + PS417_23840 0.59 +1.6 5,159,891 + PS417_23840 0.59 -0.7 5,159,891 + PS417_23840 0.59 +0.9 5,159,891 + PS417_23840 0.59 -0.4 5,159,891 + PS417_23840 0.59 -0.4 5,159,892 - PS417_23840 0.60 -0.4 5,159,892 - PS417_23840 0.60 -0.1 5,159,892 - PS417_23840 0.60 -0.2 5,159,892 - PS417_23840 0.60 +1.0 5,160,025 - -0.0 5,160,169 + -0.6 5,160,169 + -0.2 5,160,170 - +0.7 5,160,170 - -0.7 5,160,226 + -0.9 5,160,230 + -1.4 5,160,230 + -0.3 5,160,230 + +0.2 5,160,230 + +1.9 5,160,230 + -0.7 5,160,230 + -0.0 5,160,232 + +0.3 5,160,319 + -0.2 5,160,319 + +1.6 5,160,320 - -0.0 5,160,320 - +1.6 5,160,320 - -0.4 5,160,360 + PS417_23845 0.14 -0.4 5,160,630 - PS417_23845 0.49 -1.0 5,160,897 + PS417_23845 0.84 +0.3 5,160,898 - PS417_23845 0.84 -0.8 5,160,898 - PS417_23845 0.84 -0.7 5,160,898 - PS417_23845 0.84 -0.4 5,160,973 + +1.6 5,161,038 + -1.4 5,161,045 + +1.9 5,161,307 + PS417_23850 0.28 +1.9 5,161,307 + PS417_23850 0.28 +0.5 5,161,442 - PS417_23850 0.41 -2.2 5,161,442 - PS417_23850 0.41 +0.4 5,161,442 - PS417_23850 0.41 -1.3 5,161,510 + PS417_23850 0.47 -0.4 5,161,514 + PS417_23850 0.48 -0.0 5,161,626 - PS417_23850 0.58 -0.5 5,161,666 + PS417_23850 0.62 +0.0 5,161,666 + PS417_23850 0.62 +0.2 5,161,667 - PS417_23850 0.62 +1.9 5,161,821 + PS417_23850 0.77 +0.1 5,161,822 - PS417_23850 0.77 -0.3 5,161,940 + PS417_23850 0.89 -0.2
Or see this region's nucleotide sequence