Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23410 and PS417_23415 are separated by 138 nucleotides PS417_23415 and PS417_23420 overlap by 4 nucleotides
PS417_23410: PS417_23410 - membrane protein, at 5,068,417 to 5,069,328
_23410
PS417_23415: PS417_23415 - AraC family transcriptional regulator, at 5,069,467 to 5,070,342
_23415
PS417_23420: PS417_23420 - LuxR family transcriptional regulator, at 5,070,339 to 5,072,840
_23420
Position (kb) 5069
5070
5071 Strain fitness (log2 ratio) -2
-1
0
1 at 5068.550 kb on + strand, within PS417_23410 at 5068.551 kb on - strand, within PS417_23410 at 5068.694 kb on + strand, within PS417_23410 at 5068.694 kb on + strand, within PS417_23410 at 5068.695 kb on - strand, within PS417_23410 at 5068.742 kb on + strand, within PS417_23410 at 5068.743 kb on - strand, within PS417_23410 at 5068.766 kb on + strand, within PS417_23410 at 5068.767 kb on - strand at 5068.977 kb on + strand, within PS417_23410 at 5069.095 kb on + strand, within PS417_23410 at 5069.096 kb on - strand, within PS417_23410 at 5069.308 kb on + strand at 5069.313 kb on - strand at 5069.459 kb on + strand at 5069.632 kb on + strand, within PS417_23415 at 5069.633 kb on - strand, within PS417_23415 at 5069.768 kb on - strand, within PS417_23415 at 5069.927 kb on + strand, within PS417_23415 at 5070.049 kb on + strand, within PS417_23415 at 5070.049 kb on + strand, within PS417_23415 at 5070.050 kb on - strand, within PS417_23415 at 5070.169 kb on + strand, within PS417_23415 at 5070.169 kb on + strand, within PS417_23415 at 5070.437 kb on + strand at 5070.438 kb on - strand at 5070.438 kb on - strand at 5071.073 kb on - strand, within PS417_23420 at 5071.243 kb on - strand, within PS417_23420
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,068,550 + PS417_23410 0.15 -0.3 5,068,551 - PS417_23410 0.15 -0.9 5,068,694 + PS417_23410 0.30 -1.8 5,068,694 + PS417_23410 0.30 -0.4 5,068,695 - PS417_23410 0.30 -1.0 5,068,742 + PS417_23410 0.36 +0.9 5,068,743 - PS417_23410 0.36 -1.0 5,068,766 + PS417_23410 0.38 -2.0 5,068,767 - -0.4 5,068,977 + PS417_23410 0.61 -0.4 5,069,095 + PS417_23410 0.74 +1.2 5,069,096 - PS417_23410 0.74 -0.1 5,069,308 + -0.1 5,069,313 - +0.6 5,069,459 + -0.1 5,069,632 + PS417_23415 0.19 +0.0 5,069,633 - PS417_23415 0.19 +0.2 5,069,768 - PS417_23415 0.34 +0.4 5,069,927 + PS417_23415 0.53 +0.6 5,070,049 + PS417_23415 0.66 -0.2 5,070,049 + PS417_23415 0.66 -1.6 5,070,050 - PS417_23415 0.67 +0.0 5,070,169 + PS417_23415 0.80 -0.0 5,070,169 + PS417_23415 0.80 +0.8 5,070,437 + -0.5 5,070,438 - -0.1 5,070,438 - +0.6 5,071,073 - PS417_23420 0.29 -0.6 5,071,243 - PS417_23420 0.36 -0.8
Or see this region's nucleotide sequence