Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22275 and PS417_22280 are separated by 87 nucleotides PS417_22280 and PS417_22285 are separated by 1 nucleotides PS417_22285 and PS417_22290 are separated by 106 nucleotides PS417_22290 and PS417_22295 are separated by 7 nucleotides
PS417_22275: PS417_22275 - phosphoesterase, at 4,826,366 to 4,827,229
_22275
PS417_22280: PS417_22280 - septation protein A, at 4,827,317 to 4,827,913
_22280
PS417_22285: PS417_22285 - hypothetical protein, at 4,827,915 to 4,828,214
_22285
PS417_22290: PS417_22290 - translation initiation factor 2, at 4,828,321 to 4,828,728
_22290
PS417_22295: PS417_22295 - chemotaxis protein CheY, at 4,828,736 to 4,829,413
_22295
Position (kb) 4827
4828
4829 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4826.915 kb on + strand, within PS417_22275 at 4826.997 kb on + strand, within PS417_22275 at 4827.239 kb on + strand at 4827.282 kb on + strand at 4827.282 kb on + strand at 4827.283 kb on - strand at 4827.285 kb on + strand at 4827.285 kb on + strand at 4827.922 kb on - strand at 4828.152 kb on + strand, within PS417_22285 at 4828.152 kb on + strand, within PS417_22285 at 4828.153 kb on - strand, within PS417_22285 at 4828.153 kb on - strand, within PS417_22285 at 4828.153 kb on - strand, within PS417_22285 at 4828.171 kb on - strand, within PS417_22285 at 4828.247 kb on + strand at 4828.297 kb on - strand at 4828.297 kb on - strand at 4828.329 kb on - strand at 4828.329 kb on - strand at 4828.355 kb on + strand at 4828.519 kb on - strand, within PS417_22290 at 4828.755 kb on + strand at 4828.755 kb on + strand at 4828.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,826,915 + PS417_22275 0.64 +0.3 4,826,997 + PS417_22275 0.73 -0.4 4,827,239 + -0.5 4,827,282 + +0.3 4,827,282 + +1.3 4,827,283 - +0.6 4,827,285 + +4.7 4,827,285 + -0.1 4,827,922 - -0.5 4,828,152 + PS417_22285 0.79 -1.3 4,828,152 + PS417_22285 0.79 -0.0 4,828,153 - PS417_22285 0.79 -0.7 4,828,153 - PS417_22285 0.79 -0.9 4,828,153 - PS417_22285 0.79 +0.0 4,828,171 - PS417_22285 0.85 -0.7 4,828,247 + +0.4 4,828,297 - +1.0 4,828,297 - +0.9 4,828,329 - -1.2 4,828,329 - -0.3 4,828,355 + +0.9 4,828,519 - PS417_22290 0.49 +0.6 4,828,755 + -0.7 4,828,755 + +0.9 4,828,756 - -0.4
Or see this region's nucleotide sequence