Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19950 and PS417_19955 are separated by 266 nucleotides PS417_19955 and PS417_19960 are separated by 20 nucleotides PS417_19960 and PS417_19965 are separated by 114 nucleotides
PS417_19950: PS417_19950 - ATP-dependent DNA helicase RecQ, at 4,331,018 to 4,333,144
_19950
PS417_19955: PS417_19955 - hypothetical protein, at 4,333,411 to 4,333,998
_19955
PS417_19960: PS417_19960 - membrane protein, at 4,334,019 to 4,334,402
_19960
PS417_19965: PS417_19965 - histidine kinase, at 4,334,517 to 4,337,987
_19965
Position (kb) 4334
4335 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 4333.280 kb on + strand at 4333.281 kb on - strand at 4333.334 kb on + strand at 4333.334 kb on + strand at 4333.373 kb on + strand at 4333.402 kb on - strand at 4333.486 kb on + strand, within PS417_19955 at 4333.504 kb on + strand, within PS417_19955 at 4333.940 kb on - strand at 4334.132 kb on - strand, within PS417_19960 at 4334.176 kb on - strand, within PS417_19960 at 4334.223 kb on + strand, within PS417_19960 at 4334.263 kb on - strand, within PS417_19960 at 4334.363 kb on + strand, within PS417_19960 at 4334.363 kb on + strand, within PS417_19960 at 4334.363 kb on + strand, within PS417_19960 at 4334.364 kb on - strand at 4334.364 kb on - strand at 4334.367 kb on + strand at 4334.367 kb on + strand at 4334.367 kb on + strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.501 kb on + strand at 4334.501 kb on + strand at 4334.502 kb on - strand at 4334.502 kb on - strand at 4334.559 kb on + strand at 4334.559 kb on + strand at 4334.559 kb on + strand at 4334.560 kb on - strand at 4334.560 kb on - strand at 4334.571 kb on - strand at 4334.641 kb on - strand at 4334.641 kb on - strand at 4334.641 kb on - strand at 4334.661 kb on + strand at 4334.661 kb on + strand at 4334.661 kb on + strand at 4334.661 kb on + strand at 4334.662 kb on - strand at 4334.831 kb on + strand at 4334.832 kb on - strand at 4334.907 kb on + strand, within PS417_19965 at 4334.907 kb on + strand, within PS417_19965 at 4334.908 kb on - strand, within PS417_19965 at 4334.908 kb on - strand, within PS417_19965 at 4334.908 kb on - strand, within PS417_19965 at 4335.156 kb on + strand, within PS417_19965 at 4335.166 kb on - strand, within PS417_19965 at 4335.223 kb on - strand, within PS417_19965 at 4335.260 kb on - strand, within PS417_19965 at 4335.288 kb on - strand, within PS417_19965 at 4335.375 kb on + strand, within PS417_19965
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,333,280 + +0.3 4,333,281 - -0.1 4,333,334 + -0.6 4,333,334 + -2.6 4,333,373 + +1.5 4,333,402 - +0.4 4,333,486 + PS417_19955 0.13 -1.5 4,333,504 + PS417_19955 0.16 -0.5 4,333,940 - -0.2 4,334,132 - PS417_19960 0.29 -0.1 4,334,176 - PS417_19960 0.41 +2.3 4,334,223 + PS417_19960 0.53 +0.1 4,334,263 - PS417_19960 0.64 +0.0 4,334,363 + PS417_19960 0.90 +4.5 4,334,363 + PS417_19960 0.90 -0.1 4,334,363 + PS417_19960 0.90 +1.0 4,334,364 - +9.8 4,334,364 - -0.2 4,334,367 + +0.3 4,334,367 + -0.5 4,334,367 + -0.2 4,334,368 - +1.5 4,334,368 - -0.1 4,334,368 - +0.1 4,334,368 - +2.9 4,334,368 - +0.0 4,334,501 + -0.4 4,334,501 + -1.0 4,334,502 - -0.5 4,334,502 - +0.1 4,334,559 + -0.8 4,334,559 + +0.4 4,334,559 + -1.5 4,334,560 - -0.0 4,334,560 - -1.0 4,334,571 - +1.9 4,334,641 - +0.2 4,334,641 - -1.0 4,334,641 - -0.8 4,334,661 + +1.5 4,334,661 + +3.0 4,334,661 + -1.9 4,334,661 + -2.0 4,334,662 - -0.6 4,334,831 + -0.1 4,334,832 - -1.2 4,334,907 + PS417_19965 0.11 +0.6 4,334,907 + PS417_19965 0.11 -0.5 4,334,908 - PS417_19965 0.11 -0.7 4,334,908 - PS417_19965 0.11 -1.2 4,334,908 - PS417_19965 0.11 -0.0 4,335,156 + PS417_19965 0.18 -0.9 4,335,166 - PS417_19965 0.19 -1.0 4,335,223 - PS417_19965 0.20 -0.6 4,335,260 - PS417_19965 0.21 -0.9 4,335,288 - PS417_19965 0.22 +0.2 4,335,375 + PS417_19965 0.25 -0.0
Or see this region's nucleotide sequence