Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19135 and PS417_19140 are separated by 21 nucleotides PS417_19140 and PS417_19145 are separated by 46 nucleotides
PS417_19135: PS417_19135 - DeoR faimly transcriptional regulator, at 4,133,261 to 4,134,187
_19135
PS417_19140: PS417_19140 - TenA family transcriptional regulator, at 4,134,209 to 4,135,009
_19140
PS417_19145: PS417_19145 - membrane protein, at 4,135,056 to 4,137,518
_19145
Position (kb) 4134
4135
4136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 4133.246 kb on - strand at 4133.246 kb on - strand at 4133.544 kb on - strand, within PS417_19135 at 4133.958 kb on + strand, within PS417_19135 at 4133.958 kb on + strand, within PS417_19135 at 4134.141 kb on - strand at 4134.141 kb on - strand at 4134.141 kb on - strand at 4134.205 kb on + strand at 4134.300 kb on + strand, within PS417_19140 at 4134.300 kb on + strand, within PS417_19140 at 4134.300 kb on + strand, within PS417_19140 at 4134.301 kb on + strand, within PS417_19140 at 4134.301 kb on - strand, within PS417_19140 at 4134.301 kb on - strand, within PS417_19140 at 4134.306 kb on + strand, within PS417_19140 at 4134.306 kb on + strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand at 4134.307 kb on - strand, within PS417_19140 at 4134.486 kb on + strand, within PS417_19140 at 4134.487 kb on - strand, within PS417_19140 at 4134.543 kb on + strand, within PS417_19140 at 4134.544 kb on - strand, within PS417_19140 at 4134.719 kb on - strand, within PS417_19140 at 4134.798 kb on + strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.841 kb on - strand, within PS417_19140 at 4134.889 kb on - strand, within PS417_19140 at 4134.925 kb on + strand, within PS417_19140 at 4135.038 kb on + strand at 4135.038 kb on + strand at 4135.038 kb on + strand at 4135.038 kb on + strand at 4135.039 kb on - strand at 4135.122 kb on - strand at 4135.122 kb on - strand at 4135.347 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.517 kb on + strand, within PS417_19145 at 4135.517 kb on + strand, within PS417_19145 at 4135.518 kb on - strand, within PS417_19145 at 4135.518 kb on - strand, within PS417_19145 at 4135.518 kb on - strand, within PS417_19145 at 4135.518 kb on - strand at 4135.755 kb on + strand, within PS417_19145 at 4135.766 kb on + strand, within PS417_19145 at 4135.767 kb on - strand, within PS417_19145 at 4135.913 kb on - strand, within PS417_19145 at 4135.951 kb on + strand, within PS417_19145 at 4135.952 kb on - strand, within PS417_19145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,133,246 - +0.1 4,133,246 - -0.0 4,133,544 - PS417_19135 0.31 -0.0 4,133,958 + PS417_19135 0.75 -0.3 4,133,958 + PS417_19135 0.75 -0.5 4,134,141 - -0.5 4,134,141 - +3.8 4,134,141 - -0.0 4,134,205 + -0.0 4,134,300 + PS417_19140 0.11 +0.6 4,134,300 + PS417_19140 0.11 +0.6 4,134,300 + PS417_19140 0.11 -0.9 4,134,301 + PS417_19140 0.11 -1.1 4,134,301 - PS417_19140 0.11 -0.4 4,134,301 - PS417_19140 0.11 +0.1 4,134,306 + PS417_19140 0.12 +0.6 4,134,306 + PS417_19140 0.12 +0.2 4,134,307 - PS417_19140 0.12 +0.6 4,134,307 - PS417_19140 0.12 -0.3 4,134,307 - PS417_19140 0.12 -2.8 4,134,307 - PS417_19140 0.12 -0.4 4,134,307 - PS417_19140 0.12 +1.2 4,134,307 - -1.0 4,134,307 - PS417_19140 0.12 -0.6 4,134,486 + PS417_19140 0.35 +0.6 4,134,487 - PS417_19140 0.35 -0.2 4,134,543 + PS417_19140 0.42 +2.4 4,134,544 - PS417_19140 0.42 -0.6 4,134,719 - PS417_19140 0.64 +1.0 4,134,798 + PS417_19140 0.74 +2.1 4,134,799 - PS417_19140 0.74 +7.5 4,134,799 - PS417_19140 0.74 +0.0 4,134,799 - PS417_19140 0.74 +0.6 4,134,799 - PS417_19140 0.74 +0.6 4,134,841 - PS417_19140 0.79 -1.3 4,134,889 - PS417_19140 0.85 +0.1 4,134,925 + PS417_19140 0.89 -0.4 4,135,038 + -1.4 4,135,038 + -0.1 4,135,038 + -0.5 4,135,038 + +0.5 4,135,039 - -1.3 4,135,122 - -0.8 4,135,122 - -0.3 4,135,347 + PS417_19145 0.12 -0.8 4,135,513 + PS417_19145 0.19 +2.4 4,135,513 + PS417_19145 0.19 -0.3 4,135,513 + PS417_19145 0.19 +0.6 4,135,513 + PS417_19145 0.19 +0.5 4,135,513 + PS417_19145 0.19 +1.6 4,135,513 + PS417_19145 0.19 -1.1 4,135,513 + PS417_19145 0.19 -0.0 4,135,513 + PS417_19145 0.19 -1.1 4,135,513 + PS417_19145 0.19 +0.2 4,135,513 + PS417_19145 0.19 +0.4 4,135,513 + PS417_19145 0.19 -1.4 4,135,514 - PS417_19145 0.19 +0.1 4,135,514 - PS417_19145 0.19 +0.2 4,135,514 - PS417_19145 0.19 -0.1 4,135,514 - PS417_19145 0.19 +0.4 4,135,517 + PS417_19145 0.19 +1.9 4,135,517 + PS417_19145 0.19 -0.1 4,135,518 - PS417_19145 0.19 -1.4 4,135,518 - PS417_19145 0.19 +0.4 4,135,518 - PS417_19145 0.19 -0.6 4,135,518 - -0.4 4,135,755 + PS417_19145 0.28 +0.3 4,135,766 + PS417_19145 0.29 +2.0 4,135,767 - PS417_19145 0.29 +0.1 4,135,913 - PS417_19145 0.35 -1.4 4,135,951 + PS417_19145 0.36 -1.3 4,135,952 - PS417_19145 0.36 -0.7
Or see this region's nucleotide sequence