Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15365 and PS417_15370 are separated by 73 nucleotides PS417_15370 and PS417_15375 overlap by 86 nucleotides PS417_15375 and PS417_15380 are separated by 39 nucleotides PS417_15380 and PS417_15385 are separated by 30 nucleotides
PS417_15365: PS417_15365 - diaminopimelate epimerase, at 3,371,145 to 3,371,948
_15365
PS417_15370: PS417_15370 - kinase, at 3,372,022 to 3,372,597
_15370
PS417_15375: PS417_15375 - peptidoglycan-binding protein, at 3,372,512 to 3,374,107
_15375
PS417_15380: PS417_15380 - hypothetical protein, at 3,374,147 to 3,374,860
_15380
PS417_15385: PS417_15385 - amidase, at 3,374,891 to 3,375,637
_15385
Position (kb) 3372
3373
3374
3375 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3371.661 kb on - strand, within PS417_15365 at 3372.026 kb on + strand at 3372.104 kb on - strand, within PS417_15370 at 3372.427 kb on + strand, within PS417_15370 at 3372.427 kb on + strand, within PS417_15370 at 3372.427 kb on + strand, within PS417_15370 at 3372.558 kb on + strand at 3372.559 kb on - strand at 3372.574 kb on - strand at 3372.613 kb on - strand at 3372.813 kb on + strand, within PS417_15375 at 3372.813 kb on + strand, within PS417_15375 at 3372.814 kb on - strand, within PS417_15375 at 3372.954 kb on - strand, within PS417_15375 at 3372.978 kb on + strand, within PS417_15375 at 3373.783 kb on + strand, within PS417_15375 at 3373.783 kb on + strand, within PS417_15375 at 3373.783 kb on + strand, within PS417_15375 at 3373.784 kb on - strand, within PS417_15375 at 3373.785 kb on + strand at 3374.085 kb on + strand at 3374.085 kb on + strand at 3374.085 kb on + strand at 3374.086 kb on - strand at 3374.144 kb on + strand at 3374.145 kb on - strand at 3374.145 kb on - strand at 3374.145 kb on - strand at 3374.194 kb on + strand at 3374.244 kb on - strand, within PS417_15380 at 3374.244 kb on - strand, within PS417_15380 at 3374.244 kb on - strand, within PS417_15380 at 3374.244 kb on - strand, within PS417_15380 at 3374.244 kb on - strand, within PS417_15380 at 3374.367 kb on - strand, within PS417_15380 at 3374.544 kb on - strand, within PS417_15380 at 3374.643 kb on - strand, within PS417_15380 at 3374.730 kb on + strand, within PS417_15380 at 3374.804 kb on + strand at 3374.804 kb on + strand at 3374.843 kb on - strand at 3374.871 kb on + strand at 3374.875 kb on + strand at 3374.876 kb on - strand at 3374.876 kb on - strand at 3374.898 kb on + strand at 3374.899 kb on - strand at 3374.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 3,371,661 - PS417_15365 0.64 +0.1 3,372,026 + +0.6 3,372,104 - PS417_15370 0.14 +1.9 3,372,427 + PS417_15370 0.70 -0.8 3,372,427 + PS417_15370 0.70 -0.2 3,372,427 + PS417_15370 0.70 -0.2 3,372,558 + +2.8 3,372,559 - +1.6 3,372,574 - +0.6 3,372,613 - -2.6 3,372,813 + PS417_15375 0.19 +0.5 3,372,813 + PS417_15375 0.19 +0.6 3,372,814 - PS417_15375 0.19 -1.1 3,372,954 - PS417_15375 0.28 -0.6 3,372,978 + PS417_15375 0.29 +0.3 3,373,783 + PS417_15375 0.80 +0.3 3,373,783 + PS417_15375 0.80 +4.5 3,373,783 + PS417_15375 0.80 +0.4 3,373,784 - PS417_15375 0.80 +0.0 3,373,785 + +1.6 3,374,085 + +0.0 3,374,085 + +0.2 3,374,085 + -0.7 3,374,086 - -1.6 3,374,144 + +0.1 3,374,145 - -0.6 3,374,145 - -0.4 3,374,145 - -0.7 3,374,194 + +1.6 3,374,244 - PS417_15380 0.14 -2.2 3,374,244 - PS417_15380 0.14 -2.1 3,374,244 - PS417_15380 0.14 -0.4 3,374,244 - PS417_15380 0.14 +1.3 3,374,244 - PS417_15380 0.14 +0.0 3,374,367 - PS417_15380 0.31 +0.4 3,374,544 - PS417_15380 0.56 +0.1 3,374,643 - PS417_15380 0.69 -0.3 3,374,730 + PS417_15380 0.82 +0.1 3,374,804 + -1.7 3,374,804 + -1.2 3,374,843 - +0.4 3,374,871 + -0.3 3,374,875 + +0.4 3,374,876 - +0.3 3,374,876 - -0.9 3,374,898 + +0.1 3,374,899 - -0.5 3,374,899 - +2.6
Or see this region's nucleotide sequence