Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00840 and PS417_00845 are separated by 76 nucleotides PS417_00845 and PS417_00850 are separated by 69 nucleotides PS417_00850 and PS417_00855 overlap by 38 nucleotides PS417_00855 and PS417_00860 are separated by 92 nucleotides
PS417_00840: PS417_00840 - hypothetical protein, at 186,254 to 190,063
_00840
PS417_00845: PS417_00845 - transcriptional regulator, at 190,140 to 190,505
_00845
PS417_00850: PS417_00850 - hypothetical protein, at 190,575 to 190,763
_00850
PS417_00855: PS417_00855 - chromosome segregation protein SMC, at 190,726 to 191,670
_00855
PS417_00860: PS417_00860 - hypothetical protein, at 191,763 to 194,669
_00860
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1 at 189.762 kb on - strand at 189.762 kb on - strand at 189.854 kb on - strand at 189.921 kb on + strand at 189.922 kb on - strand at 190.010 kb on + strand at 190.011 kb on - strand at 190.142 kb on - strand at 190.366 kb on + strand, within PS417_00845 at 190.437 kb on + strand, within PS417_00845 at 190.531 kb on - strand at 190.577 kb on - strand at 190.856 kb on + strand, within PS417_00855 at 190.942 kb on + strand, within PS417_00855 at 190.990 kb on + strand, within PS417_00855 at 191.076 kb on + strand, within PS417_00855 at 191.102 kb on + strand, within PS417_00855 at 191.102 kb on + strand, within PS417_00855 at 191.102 kb on + strand, within PS417_00855 at 191.102 kb on + strand, within PS417_00855 at 191.106 kb on + strand, within PS417_00855 at 191.110 kb on + strand, within PS417_00855 at 191.110 kb on + strand, within PS417_00855 at 191.163 kb on + strand, within PS417_00855 at 191.164 kb on - strand, within PS417_00855 at 191.470 kb on + strand, within PS417_00855 at 191.470 kb on + strand, within PS417_00855 at 191.470 kb on + strand, within PS417_00855 at 191.470 kb on + strand, within PS417_00855 at 191.474 kb on - strand, within PS417_00855 at 191.608 kb on + strand at 191.676 kb on + strand at 191.677 kb on - strand at 191.807 kb on + strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.816 kb on - strand at 191.886 kb on + strand at 191.886 kb on + strand at 191.886 kb on + strand at 191.971 kb on + strand at 191.971 kb on + strand at 191.974 kb on + strand at 191.975 kb on - strand at 191.975 kb on - strand at 192.449 kb on - strand, within PS417_00860 at 192.564 kb on + strand, within PS417_00860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 189,762 - +1.2 189,762 - +0.1 189,854 - -0.4 189,921 + -0.2 189,922 - -0.6 190,010 + +0.9 190,011 - +0.4 190,142 - -0.5 190,366 + PS417_00845 0.62 -0.2 190,437 + PS417_00845 0.81 +0.0 190,531 - +0.0 190,577 - +0.6 190,856 + PS417_00855 0.14 -1.6 190,942 + PS417_00855 0.23 -1.5 190,990 + PS417_00855 0.28 +1.0 191,076 + PS417_00855 0.37 -0.5 191,102 + PS417_00855 0.40 +1.4 191,102 + PS417_00855 0.40 -0.8 191,102 + PS417_00855 0.40 -0.6 191,102 + PS417_00855 0.40 -0.0 191,106 + PS417_00855 0.40 -0.1 191,110 + PS417_00855 0.41 -1.5 191,110 + PS417_00855 0.41 -1.0 191,163 + PS417_00855 0.46 -1.7 191,164 - PS417_00855 0.46 +0.6 191,470 + PS417_00855 0.79 +0.0 191,470 + PS417_00855 0.79 -0.2 191,470 + PS417_00855 0.79 -0.8 191,470 + PS417_00855 0.79 -0.7 191,474 - PS417_00855 0.79 -0.7 191,608 + -2.6 191,676 + -0.2 191,677 - +0.3 191,807 + -0.2 191,815 + +0.1 191,815 + -1.2 191,815 + -0.2 191,816 - +0.9 191,886 + +0.3 191,886 + -0.7 191,886 + -2.4 191,971 + -0.4 191,971 + -0.1 191,974 + -1.4 191,975 - +0.8 191,975 - +1.6 192,449 - PS417_00860 0.24 +0.6 192,564 + PS417_00860 0.28 -0.8
Or see this region's nucleotide sequence