Strain Fitness in Pseudomonas simiae WCS417 around PS417_06340

Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06330 and PS417_06335 are separated by 8 nucleotidesPS417_06335 and PS417_06340 are separated by 54 nucleotidesPS417_06340 and PS417_06345 overlap by 4 nucleotides PS417_06330: PS417_06330 - S-(hydroxymethyl)glutathione dehydrogenase, at 1,406,099 to 1,407,211 _06330 PS417_06335: PS417_06335 - S-formylglutathione hydrolase, at 1,407,220 to 1,408,065 _06335 PS417_06340: PS417_06340 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,408,120 to 1,408,593 _06340 PS417_06345: PS417_06345 - pseudouridine synthase, at 1,408,590 to 1,409,648 _06345 Position (kb) 1408 1409Strain fitness (log2 ratio) -2 -1 0 1 2at 1407.274 kb on + strandat 1407.541 kb on + strand, within PS417_06335at 1407.592 kb on + strand, within PS417_06335at 1407.592 kb on + strandat 1407.593 kb on - strand, within PS417_06335at 1407.593 kb on - strand, within PS417_06335at 1407.593 kb on - strand, within PS417_06335at 1407.989 kb on - strandat 1408.000 kb on + strandat 1408.001 kb on - strandat 1408.001 kb on - strandat 1408.815 kb on + strand, within PS417_06345at 1408.815 kb on + strand, within PS417_06345at 1408.816 kb on - strand, within PS417_06345at 1408.816 kb on - strand, within PS417_06345at 1409.070 kb on + strand, within PS417_06345at 1409.070 kb on + strand, within PS417_06345at 1409.070 kb on + strand, within PS417_06345at 1409.071 kb on - strand, within PS417_06345

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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1,407,274 + +2.7
1,407,541 + PS417_06335 0.38 -1.2
1,407,592 + PS417_06335 0.44 -1.4
1,407,592 + -1.2
1,407,593 - PS417_06335 0.44 +0.6
1,407,593 - PS417_06335 0.44 -0.2
1,407,593 - PS417_06335 0.44 -1.7
1,407,989 - -1.4
1,408,000 + -2.6
1,408,001 - -0.7
1,408,001 - -0.4
1,408,815 + PS417_06345 0.21 -0.4
1,408,815 + PS417_06345 0.21 -0.4
1,408,816 - PS417_06345 0.21 +0.0
1,408,816 - PS417_06345 0.21 -1.2
1,409,070 + PS417_06345 0.45 +0.2
1,409,070 + PS417_06345 0.45 -0.1
1,409,070 + PS417_06345 0.45 +1.1
1,409,071 - PS417_06345 0.45 -0.1

Or see this region's nucleotide sequence