Experiment: PUT8 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5617 and PP_3688 are separated by 192 nucleotides PP_3688 and PP_5618 are separated by 38 nucleotides PP_5618 and PP_5619 are separated by 368 nucleotides PP_5619 and PP_5620 are separated by 379 nucleotides
PP_5617: PP_5617 - conserved protein of unknown function, at 4,194,564 to 4,194,782
_5617
PP_3688: PP_3688 - conserved protein of unknown function, at 4,194,975 to 4,195,673
_3688
PP_5618: PP_5618 - putative Cro/CI transcriptional regulator, at 4,195,712 to 4,196,158
_5618
PP_5619: PP_5619 - protein of unknown function, at 4,196,527 to 4,196,769
_5619
PP_5620: PP_5620 - conserved protein of unknown function, at 4,197,149 to 4,197,682
_5620
Position (kb)
4195
4196
4197 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4194.754 kb on + strand, within PP_5617 at 4194.754 kb on + strand, within PP_5617 at 4194.754 kb on + strand, within PP_5617 at 4194.754 kb on + strand, within PP_5617 at 4194.754 kb on + strand, within PP_5617 at 4194.851 kb on - strand at 4194.909 kb on - strand at 4194.909 kb on - strand at 4194.918 kb on + strand at 4194.922 kb on + strand at 4194.922 kb on + strand at 4194.922 kb on + strand at 4194.922 kb on + strand at 4194.922 kb on + strand at 4194.923 kb on - strand at 4195.006 kb on - strand at 4195.056 kb on + strand, within PP_3688 at 4195.056 kb on + strand, within PP_3688 at 4195.057 kb on - strand, within PP_3688 at 4195.258 kb on + strand, within PP_3688 at 4195.439 kb on + strand, within PP_3688 at 4195.452 kb on - strand, within PP_3688 at 4195.481 kb on + strand, within PP_3688 at 4195.487 kb on - strand, within PP_3688 at 4195.532 kb on + strand, within PP_3688 at 4195.532 kb on + strand, within PP_3688 at 4195.532 kb on + strand, within PP_3688 at 4195.533 kb on - strand, within PP_3688 at 4195.533 kb on - strand, within PP_3688 at 4195.533 kb on - strand, within PP_3688 at 4195.533 kb on - strand, within PP_3688 at 4195.533 kb on - strand, within PP_3688 at 4195.535 kb on - strand, within PP_3688 at 4195.560 kb on + strand, within PP_3688 at 4195.560 kb on + strand, within PP_3688 at 4195.561 kb on - strand, within PP_3688 at 4195.561 kb on - strand, within PP_3688 at 4195.561 kb on - strand, within PP_3688 at 4195.580 kb on + strand at 4195.580 kb on + strand, within PP_3688 at 4195.580 kb on + strand, within PP_3688 at 4195.581 kb on - strand, within PP_3688 at 4195.586 kb on - strand, within PP_3688 at 4195.653 kb on - strand at 4195.711 kb on + strand at 4195.712 kb on - strand at 4195.902 kb on + strand, within PP_5618 at 4195.902 kb on + strand, within PP_5618 at 4195.902 kb on + strand, within PP_5618 at 4195.903 kb on - strand, within PP_5618 at 4195.903 kb on - strand, within PP_5618 at 4195.905 kb on + strand, within PP_5618 at 4195.906 kb on - strand, within PP_5618 at 4195.906 kb on - strand, within PP_5618 at 4195.927 kb on + strand, within PP_5618 at 4195.927 kb on + strand, within PP_5618 at 4195.928 kb on - strand at 4195.928 kb on - strand, within PP_5618 at 4195.928 kb on - strand, within PP_5618 at 4195.928 kb on - strand, within PP_5618 at 4195.928 kb on - strand, within PP_5618 at 4195.953 kb on + strand, within PP_5618 at 4195.953 kb on + strand, within PP_5618 at 4195.953 kb on + strand at 4195.954 kb on - strand, within PP_5618 at 4195.954 kb on - strand at 4196.001 kb on + strand, within PP_5618 at 4196.001 kb on + strand, within PP_5618 at 4196.001 kb on + strand, within PP_5618 at 4196.002 kb on - strand, within PP_5618 at 4196.087 kb on - strand, within PP_5618 at 4196.121 kb on + strand at 4196.121 kb on + strand at 4196.137 kb on + strand at 4196.162 kb on + strand at 4196.162 kb on + strand at 4196.163 kb on - strand at 4196.185 kb on + strand at 4196.186 kb on - strand at 4196.437 kb on + strand at 4196.437 kb on + strand at 4196.437 kb on + strand at 4196.437 kb on + strand at 4196.437 kb on + strand at 4196.438 kb on - strand at 4196.438 kb on - strand at 4196.466 kb on + strand at 4196.466 kb on + strand at 4196.466 kb on + strand at 4196.467 kb on - strand at 4196.474 kb on + strand at 4196.475 kb on - strand at 4196.538 kb on + strand at 4196.539 kb on - strand at 4196.561 kb on - strand, within PP_5619 at 4196.680 kb on + strand, within PP_5619 at 4196.681 kb on - strand, within PP_5619 at 4196.696 kb on + strand, within PP_5619 at 4196.867 kb on + strand at 4196.872 kb on + strand at 4196.883 kb on + strand at 4196.883 kb on + strand at 4196.933 kb on + strand at 4196.937 kb on + strand at 4196.938 kb on - strand at 4196.938 kb on - strand at 4197.000 kb on + strand at 4197.000 kb on + strand at 4197.001 kb on - strand at 4197.001 kb on - strand at 4197.074 kb on - strand at 4197.081 kb on + strand at 4197.086 kb on + strand at 4197.134 kb on + strand at 4197.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PUT8 MOI 0.1 remove 4,194,754 + PP_5617 0.87 +1.4 4,194,754 + PP_5617 0.87 -1.0 4,194,754 + PP_5617 0.87 -0.0 4,194,754 + PP_5617 0.87 -0.4 4,194,754 + PP_5617 0.87 -0.2 4,194,851 - -0.1 4,194,909 - +0.4 4,194,909 - -0.8 4,194,918 + -1.0 4,194,922 + +0.8 4,194,922 + -3.1 4,194,922 + +0.3 4,194,922 + +0.4 4,194,922 + +0.5 4,194,923 - -0.7 4,195,006 - +0.9 4,195,056 + PP_3688 0.12 -0.4 4,195,056 + PP_3688 0.12 -0.4 4,195,057 - PP_3688 0.12 +0.5 4,195,258 + PP_3688 0.40 +2.4 4,195,439 + PP_3688 0.66 +0.0 4,195,452 - PP_3688 0.68 -2.5 4,195,481 + PP_3688 0.72 -0.2 4,195,487 - PP_3688 0.73 -3.7 4,195,532 + PP_3688 0.80 +1.4 4,195,532 + PP_3688 0.80 -1.8 4,195,532 + PP_3688 0.80 -0.4 4,195,533 - PP_3688 0.80 -0.1 4,195,533 - PP_3688 0.80 +0.7 4,195,533 - PP_3688 0.80 +1.2 4,195,533 - PP_3688 0.80 +0.6 4,195,533 - PP_3688 0.80 -0.5 4,195,535 - PP_3688 0.80 +0.7 4,195,560 + PP_3688 0.84 +0.7 4,195,560 + PP_3688 0.84 -0.2 4,195,561 - PP_3688 0.84 -0.9 4,195,561 - PP_3688 0.84 -0.9 4,195,561 - PP_3688 0.84 +0.2 4,195,580 + -2.3 4,195,580 + PP_3688 0.87 +0.5 4,195,580 + PP_3688 0.87 +0.8 4,195,581 - PP_3688 0.87 +0.5 4,195,586 - PP_3688 0.87 -2.3 4,195,653 - +0.0 4,195,711 + -0.6 4,195,712 - -1.4 4,195,902 + PP_5618 0.43 +0.3 4,195,902 + PP_5618 0.43 -2.8 4,195,902 + PP_5618 0.43 -0.2 4,195,903 - PP_5618 0.43 -0.8 4,195,903 - PP_5618 0.43 +0.2 4,195,905 + PP_5618 0.43 -0.1 4,195,906 - PP_5618 0.43 -0.6 4,195,906 - PP_5618 0.43 -2.7 4,195,927 + PP_5618 0.48 -1.7 4,195,927 + PP_5618 0.48 +0.7 4,195,928 - +1.1 4,195,928 - PP_5618 0.48 -1.2 4,195,928 - PP_5618 0.48 +0.4 4,195,928 - PP_5618 0.48 +0.9 4,195,928 - PP_5618 0.48 -1.7 4,195,953 + PP_5618 0.54 -0.1 4,195,953 + PP_5618 0.54 -0.2 4,195,953 + -0.2 4,195,954 - PP_5618 0.54 -0.9 4,195,954 - -0.1 4,196,001 + PP_5618 0.65 -0.9 4,196,001 + PP_5618 0.65 -0.3 4,196,001 + PP_5618 0.65 -0.1 4,196,002 - PP_5618 0.65 -0.4 4,196,087 - PP_5618 0.84 -1.3 4,196,121 + +0.2 4,196,121 + -1.5 4,196,137 + -1.2 4,196,162 + -0.7 4,196,162 + +0.0 4,196,163 - -0.3 4,196,185 + -0.1 4,196,186 - +0.1 4,196,437 + -0.2 4,196,437 + -0.8 4,196,437 + -2.2 4,196,437 + +0.4 4,196,437 + +0.0 4,196,438 - +0.1 4,196,438 - -1.0 4,196,466 + +1.9 4,196,466 + +0.8 4,196,466 + -0.8 4,196,467 - +0.6 4,196,474 + +0.0 4,196,475 - -0.6 4,196,538 + -0.1 4,196,539 - +0.0 4,196,561 - PP_5619 0.14 +0.7 4,196,680 + PP_5619 0.63 +0.2 4,196,681 - PP_5619 0.63 +0.5 4,196,696 + PP_5619 0.70 +1.4 4,196,867 + -0.0 4,196,872 + -1.1 4,196,883 + -1.7 4,196,883 + +0.1 4,196,933 + +0.7 4,196,937 + -3.0 4,196,938 - +0.3 4,196,938 - -0.1 4,197,000 + -3.9 4,197,000 + +0.3 4,197,001 - -0.7 4,197,001 - -0.3 4,197,074 - +0.8 4,197,081 + +0.6 4,197,086 + -1.2 4,197,134 + +0.4 4,197,146 - +1.4
Or see this region's nucleotide sequence