Strain Fitness in Pseudomonas putida KT2440 around PP_5726

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,972,051	+				+0.3
5,972,088	-				-0.6
5,972,196	+				-4.6
5,972,197	-				-2.7
5,972,229	+				+0.1
5,972,303	+		PP_5238	0.18	+0.9
5,972,304	-		PP_5238	0.18	+0.5
5,972,401	-		PP_5238	0.38	-1.9
5,972,456	-		PP_5238	0.49	-1.3
5,972,477	-		PP_5238	0.54	-1.0
5,972,505	+		PP_5238	0.60	+0.9
5,972,508	+		PP_5238	0.60	-4.3
5,972,508	+		PP_5238	0.60	+0.9
5,972,509	-		PP_5238	0.60	-4.2
5,972,509	-		PP_5238	0.60	+0.2
5,972,584	+		PP_5238	0.76	+0.2
5,972,610	-		PP_5238	0.81	-0.6
5,972,616	+		PP_5238	0.82	+1.3
5,972,617	-		PP_5238	0.82	+0.6
5,972,678	+				+0.2
5,972,679	-				-2.8
5,972,694	-				-1.4
5,972,695	-				-1.3
5,972,695	-				+0.7
5,972,695	-				-0.9
5,972,736	-				-0.1
5,972,754	+		PP_5725	0.15	+1.4
5,972,754	+		PP_5725	0.15	-3.5
5,972,755	-		PP_5725	0.15	-0.3
5,972,834	+		PP_5725	0.42	-0.7
5,972,835	-		PP_5725	0.43	-1.1
5,972,845	+		PP_5725	0.46	+0.2
5,972,867	-		PP_5725	0.54	-4.1
5,973,002	-				+1.9
5,973,039	+				+1.2
5,973,153	-		PP_5726	0.23	-0.1
5,973,178	+		PP_5726	0.27	+2.1
5,973,200	-		PP_5726	0.30	-2.1
5,973,230	-		PP_5726	0.34	+1.1
5,973,359	+		PP_5726	0.53	+0.7
5,973,360	-		PP_5726	0.53	+1.5
5,973,361	+		PP_5726	0.53	+0.1
5,973,400	+		PP_5726	0.58	-0.6
5,973,401	-		PP_5726	0.59	+0.2
5,973,453	-		PP_5726	0.66	-0.7
5,973,521	-		PP_5726	0.76	+0.4
5,973,522	+		PP_5726	0.76	+0.3
5,973,523	-		PP_5726	0.76	+0.6
5,973,526	+		PP_5726	0.77	+0.4
5,973,526	+		PP_5726	0.77	-0.2
5,973,527	-		PP_5726	0.77	+0.9
5,973,527	-		PP_5726	0.77	-0.1
5,973,527	-		PP_5726	0.77	+0.9
5,973,569	-		PP_5726	0.83	-0.0
5,973,569	-		PP_5726	0.83	+2.8
5,973,569	-		PP_5726	0.83	-1.8
5,973,569	-		PP_5726	0.83	+1.2
5,973,569	-		PP_5726	0.83	+0.9
5,973,579	+		PP_5726	0.84	+1.1
5,973,580	-		PP_5726	0.84	+0.7
5,973,580	-		PP_5726	0.84	+1.4
5,973,591	+		PP_5726	0.86	+0.3
5,973,607	-		PP_5726	0.88	+0.3
5,973,607	-		PP_5726	0.88	+1.8
5,973,697	-				+2.0
5,973,714	-				+0.8
5,973,764	+				-0.1
5,973,770	-				-2.3
5,973,864	+				+0.3
5,973,864	+				-0.2
5,973,918	-				-1.6
5,973,922	-				+1.7
5,973,951	+				+0.5
5,973,977	+				+0.1
5,973,997	-				-3.5
5,974,113	-				-1.2
5,974,196	-				-4.1
5,974,249	+				-1.3
5,974,249	+				-1.7
5,974,252	+				+1.6
5,974,252	+				-1.0
5,974,307	+				-0.1
5,974,307	+				-0.4
5,974,307	+				-0.1
5,974,308	-				+1.1
5,974,308	-				-1.1
5,974,361	+				+0.6
5,974,362	-				-2.9
5,974,383	-				-3.2
5,974,383	-				+0.4
5,974,404	-				+0.7
5,974,433	-				-0.3
5,974,557	-				+0.7
5,974,557	-				+1.5
5,974,606	+				-5.2