Strain Fitness in Pseudomonas putida KT2440 around PP_5643

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
4,412,431	+				+0.8
4,412,432	-				+1.4
4,412,432	-				+0.4
4,412,432	-				+0.1
4,412,488	+				+1.3
4,412,489	-				+1.0
4,412,514	-		PP_3897	0.11	+0.8
4,412,586	+		PP_3897	0.28	-4.2
4,412,586	+		PP_3897	0.28	+0.4
4,412,586	+		PP_3897	0.28	+1.0
4,412,587	-		PP_3897	0.28	-2.5
4,412,647	+		PP_3897	0.43	+0.8
4,412,648	-		PP_3897	0.43	+1.6
4,412,651	+		PP_3897	0.44	-4.2
4,412,651	+		PP_3897	0.44	+0.4
4,412,651	+		PP_3897	0.44	+0.0
4,412,651	+		PP_3897	0.44	-1.1
4,412,651	+		PP_3897	0.44	+0.5
4,412,651	+		PP_3897	0.44	-0.4
4,412,652	-		PP_3897	0.44	+1.4
4,412,652	-		PP_3897	0.44	+0.6
4,412,652	-		PP_3897	0.44	+1.3
4,412,652	-		PP_3897	0.44	-1.8
4,412,683	+		PP_3897	0.51	-0.5
4,412,701	+		PP_3897	0.56	+1.3
4,412,701	+		PP_3897	0.56	-1.3
4,412,701	+		PP_3897	0.56	-2.6
4,412,770	+		PP_3897	0.72	-1.3
4,412,770	+		PP_3897	0.72	-1.5
4,412,771	-		PP_3897	0.73	-1.6
4,412,771	-		PP_3897	0.73	-0.2
4,412,771	-		PP_3897	0.73	+1.5
4,412,771	-		PP_3897	0.73	+1.1
4,412,771	-		PP_3897	0.73	-0.6
4,412,771	-		PP_3897	0.73	+0.3
4,412,887	+				-1.3
4,412,888	-				+1.1
4,412,888	-				+1.0
4,412,888	-				-4.8
4,412,901	+				+0.2
4,413,010	-		PP_3898	0.35	-2.0
4,413,010	-		PP_3898	0.35	-4.7
4,413,010	-		PP_3898	0.35	+1.4
4,413,116	+		PP_3898	0.80	+0.4
4,413,116	+		PP_3898	0.80	+2.6
4,413,117	-		PP_3898	0.80	-0.5
4,413,176	+				+1.4
4,413,176	+				-3.3
4,413,177	-				-1.0
4,413,215	+				-0.1
4,413,216	-				+0.8
4,413,216	-				-4.1
4,413,216	-				+2.3
4,413,218	+				-0.8
4,413,219	-				+1.0
4,413,357	-				-4.4
4,413,372	+				+0.3
4,413,381	-				-2.2
4,413,545	+		PP_5643	0.22	-2.7
4,413,631	+		PP_5643	0.30	-2.6
4,413,679	+		PP_5643	0.35	+1.8
4,413,683	-		PP_5643	0.36	+1.7
4,413,714	+		PP_5643	0.39	-0.2
4,413,719	-		PP_5643	0.39	+2.0
4,413,722	+		PP_5643	0.39	+0.1
4,413,863	+		PP_5643	0.54	+0.6
4,413,864	-		PP_5643	0.54	+2.0
4,413,890	+		PP_5643	0.56	+1.4
4,413,901	+		PP_5643	0.58	+0.8
4,413,902	-		PP_5643	0.58	-1.7
4,413,952	+		PP_5643	0.63	+1.3
4,414,004	+		PP_5643	0.68	-2.7
4,414,004	+		PP_5643	0.68	-2.0
4,414,004	+		PP_5643	0.68	+1.6
4,414,005	-		PP_5643	0.68	+0.1
4,414,005	-		PP_5643	0.68	-1.0
4,414,005	-		PP_5643	0.68	+0.8
4,414,005	-		PP_5643	0.68	+0.5
4,414,044	-		PP_5643	0.72	+0.8
4,414,060	+		PP_5643	0.74	+2.6
4,414,061	-		PP_5643	0.74	-0.4
4,414,063	+		PP_5643	0.74	-0.2
4,414,064	-		PP_5643	0.74	+1.4
4,414,064	-				+1.8
4,414,125	+		PP_5643	0.80	+1.3
4,414,126	-		PP_5643	0.80	+1.2
4,414,143	-		PP_5643	0.82	+0.9
4,414,148	+		PP_5643	0.82	-3.6
4,414,148	+		PP_5643	0.82	+2.1
4,414,182	-		PP_5643	0.86	+1.5
4,414,190	+		PP_5643	0.87	+2.5
4,414,217	+		PP_5643	0.89	+2.1
4,414,218	-		PP_5643	0.89	-2.7
4,414,218	-		PP_5643	0.89	-0.3
4,414,218	-		PP_5643	0.89	+0.1
4,414,218	-		PP_5643	0.89	-1.6
4,414,218	-		PP_5643	0.89	+1.9
4,414,241	-				+1.7
4,414,241	-				+1.4
4,414,241	-				+0.7
4,414,241	-				+0.7
4,414,342	-				+2.6
4,414,432	-		PP_5644	0.19	+2.3
4,414,437	+		PP_5644	0.20	+0.9
4,414,489	-		PP_5644	0.29	-0.9
4,414,814	+		PP_5644	0.86	-2.7
4,414,863	-				+1.3
4,414,863	-				-1.3
4,414,866	-				-1.3
4,414,869	+				-2.5
4,414,870	-				-2.2
4,414,874	+				-4.2
4,415,018	+				+0.1
4,415,018	+				-0.3
4,415,019	-				+0.9
4,415,078	+				-3.1
4,415,079	-				-0.1
4,415,079	-				+0.7
4,415,150	-		PP_3899	0.27	+0.2
4,415,150	-		PP_3899	0.27	+0.7