Strain Fitness in Pseudomonas putida KT2440 around PP_5586

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,536,250	+				-4.5
3,536,251	-				-3.3
3,536,328	-				-0.9
3,536,369	-				-3.0
3,536,389	+				-0.4
3,536,710	+		PP_3125	0.64	+1.1
3,536,711	-		PP_3125	0.64	-1.1
3,536,854	-				+2.7
3,536,874	+				-0.7
3,536,875	-				-1.7
3,536,923	+				-0.4
3,536,923	+				+0.9
3,536,923	+				+1.5
3,536,924	-				+0.8
3,536,924	-				-4.1
3,536,924	-				-3.8
3,536,986	-				-0.8
3,536,986	-				-0.6
3,537,076	+				+0.6
3,537,091	+				-0.7
3,537,119	-				-3.5
3,537,155	+				+0.4
3,537,202	+		PP_5586	0.26	-4.5
3,537,203	-		PP_5586	0.27	-4.8
3,537,233	+		PP_5586	0.44	-1.4
3,537,235	+		PP_5586	0.45	-1.8
3,537,235	+		PP_5586	0.45	-2.3
3,537,235	+		PP_5586	0.45	-0.7
3,537,346	+				+1.0
3,537,346	+				+0.6
3,537,346	+				-0.4
3,537,411	+				+1.4
3,537,411	+				-0.0
3,537,411	+				-1.5
3,537,412	-				+0.5
3,537,443	-				+0.5
3,537,443	-				+0.1
3,537,679	-		PP_3126	0.15	-0.7
3,537,679	-				-0.9
3,537,751	+		PP_3126	0.28	+0.5
3,537,752	-		PP_3126	0.28	-0.1
3,537,752	-		PP_3126	0.28	-1.3
3,537,767	+		PP_3126	0.30	-0.1
3,537,768	-		PP_3126	0.31	-3.6
3,537,768	-		PP_3126	0.31	+1.6
3,537,814	+		PP_3126	0.39	-3.7
3,537,814	+		PP_3126	0.39	-0.5
3,537,856	-		PP_3126	0.46	-4.6
3,537,874	+		PP_3126	0.50	+0.5
3,537,874	+		PP_3126	0.50	-0.7
3,537,875	-		PP_3126	0.50	-3.8
3,537,875	-		PP_3126	0.50	+1.2
3,537,875	-		PP_3126	0.50	+0.8
3,537,875	-		PP_3126	0.50	+0.5
3,537,875	-		PP_3126	0.50	+0.7
3,537,875	-		PP_3126	0.50	-3.2
3,537,912	+		PP_3126	0.56	-0.5
3,537,912	+		PP_3126	0.56	-3.6
3,537,913	-		PP_3126	0.57	+1.2
3,537,913	-		PP_3126	0.57	+0.2
3,537,913	-		PP_3126	0.57	+0.4
3,537,913	-		PP_3126	0.57	+0.5
3,538,078	-		PP_3126	0.86	+2.7
3,538,079	+		PP_3126	0.86	+1.5
3,538,079	+		PP_3126	0.86	-4.8
3,538,080	-		PP_3126	0.87	-2.8
3,538,080	-		PP_3126	0.87	+0.2
3,538,080	-		PP_3126	0.87	-1.1
3,538,080	-		PP_3126	0.87	-0.1
3,538,080	-		PP_3126	0.87	+1.0
3,538,080	-		PP_3126	0.87	+0.5
3,538,080	-		PP_3126	0.87	+0.2
3,538,080	-		PP_3126	0.87	-0.4
3,538,136	+				+0.7
3,538,164	+				+0.6
3,538,167	+				+2.6
3,538,167	+				+0.7
3,538,167	+				+0.2
3,538,168	-				-0.5
3,538,178	-				+0.4
3,538,190	+				-3.3
3,538,190	+				+1.3
3,538,191	-				-0.2
3,538,191	-				+0.2
3,538,244	-				-3.8
3,538,276	+				-2.6