Strain Fitness in Pseudomonas putida KT2440 around PP_5568

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,500,631	+		PP_5566	0.37	+0.4
3,500,631	+		PP_5566	0.37	+1.0
3,500,631	+		PP_5566	0.37	-3.9
3,500,632	-		PP_5566	0.38	-1.5
3,500,632	-		PP_5566	0.38	+0.4
3,500,654	+		PP_5566	0.47	+0.6
3,500,726	+		PP_5566	0.77	+0.1
3,500,742	-		PP_5566	0.83	+1.6
3,500,808	+				+0.2
3,500,808	+				+0.9
3,500,809	-				-3.1
3,500,897	-				-3.4
3,500,979	+				+0.2
3,500,980	-				+2.4
3,500,980	-				-2.4
3,501,026	+				+0.3
3,501,026	+				+0.0
3,501,027	-				+1.0
3,501,027	-				+2.1
3,501,195	+				+0.8
3,501,405	+		PP_5567	0.72	-2.6
3,501,510	+				+1.5
3,501,511	-				+0.0
3,501,525	-				+1.9
3,501,770	+		PP_5568	0.22	+1.5
3,501,804	+		PP_5568	0.27	-2.7
3,501,805	-		PP_5568	0.27	-0.1
3,501,931	+		PP_5568	0.45	-2.8
3,501,957	-		PP_5568	0.49	+1.3
3,502,005	+		PP_5568	0.56	-0.5
3,502,006	-				+1.9
3,502,011	+		PP_5568	0.57	+0.7
3,502,097	+		PP_5568	0.69	+1.9
3,502,097	+		PP_5568	0.69	+2.1
3,502,194	+		PP_5568	0.83	-3.2
3,502,226	+		PP_5568	0.88	+1.2
3,502,247	+				+1.2
3,502,260	+				-0.1
3,502,320	+				-1.1
3,502,320	+				-3.3
3,502,392	+		PP_5569	0.23	+2.4
3,502,402	-		PP_5569	0.27	+1.6
3,502,414	-		PP_5569	0.33	-1.7
3,502,478	-		PP_5569	0.65	+1.0
3,502,478	-				+0.9
3,502,481	+		PP_5569	0.66	-0.7
3,502,520	-		PP_5569	0.85	+2.8
3,502,522	-		PP_5569	0.86	+0.0
3,502,593	+				-1.8
3,502,852	-		PP_5571	0.47	-0.1
3,503,026	-				-2.7
3,503,069	-		PP_5572	0.16	+1.7
3,503,154	+		PP_5572	0.46	+1.9
3,503,169	+		PP_5572	0.51	-3.8
3,503,169	+		PP_5572	0.51	+1.4
3,503,195	-		PP_5572	0.61	-3.4