Strain Fitness in Pseudomonas putida KT2440 around PP_4950

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,637,935	+		PP_4949	0.32	-3.0
5,637,936	-		PP_4949	0.33	+0.3
5,638,268	+		PP_4949	0.56	-3.3
5,638,269	-		PP_4949	0.56	+0.6
5,638,317	-		PP_4949	0.59	+0.0
5,638,376	+		PP_4949	0.63	-1.2
5,638,376	+		PP_4949	0.63	+2.0
5,638,377	-		PP_4949	0.63	-3.7
5,638,377	-		PP_4949	0.63	-4.0
5,638,377	-		PP_4949	0.63	+0.6
5,638,618	+		PP_4949	0.80	-5.2
5,638,618	+		PP_4949	0.80	+0.2
5,638,619	-		PP_4949	0.80	-3.8
5,638,619	-		PP_4949	0.80	+0.2
5,638,619	-		PP_4949	0.80	+0.8
5,638,730	+		PP_4949	0.88	-0.6
5,638,786	+				+0.5
5,638,786	+				-4.1
5,638,787	-				+0.7
5,638,890	+				+0.2
5,638,890	+				+0.4
5,638,891	-				+0.8
5,638,891	-				+0.8
5,639,204	-		PP_4950	0.22	-2.1
5,639,204	-		PP_4950	0.22	-0.8
5,639,238	+		PP_4950	0.25	-0.4
5,639,239	-		PP_4950	0.25	+1.4
5,639,326	+		PP_4950	0.32	-4.5
5,639,343	-		PP_4950	0.33	+0.4
5,639,452	+		PP_4950	0.41	+0.2
5,639,452	+		PP_4950	0.41	-1.0
5,639,453	-		PP_4950	0.41	-0.3
5,639,453	-		PP_4950	0.41	+1.8
5,639,453	-		PP_4950	0.41	-1.2
5,639,453	-		PP_4950	0.41	-4.3
5,639,453	-		PP_4950	0.41	-4.2
5,639,453	-		PP_4950	0.41	-0.7
5,639,453	-		PP_4950	0.41	-2.9
5,639,542	-		PP_4950	0.48	+1.5
5,639,570	-		PP_4950	0.50	-0.2
5,639,671	+		PP_4950	0.58	+0.5
5,639,671	+		PP_4950	0.58	-1.3
5,639,672	-		PP_4950	0.58	-3.1
5,639,733	+		PP_4950	0.62	+0.6
5,639,947	+		PP_4950	0.79	-4.9
5,639,947	+		PP_4950	0.79	-5.3
5,639,948	-		PP_4950	0.79	-0.1
5,639,974	+		PP_4950	0.81	-2.7
5,640,032	+		PP_4950	0.85	-1.7
5,640,063	+		PP_4950	0.87	-4.0
5,640,064	-		PP_4950	0.88	-1.9
5,640,064	-		PP_4950	0.88	+0.2
5,640,088	+		PP_4950	0.89	-0.1
5,640,089	-		PP_4950	0.89	+0.5
5,640,089	-		PP_4950	0.89	+0.8
5,640,089	-		PP_4950	0.89	-0.9
5,640,153	+				+0.5
5,640,154	-				-2.1
5,640,154	-				+0.1
5,640,157	+				-0.1
5,640,158	-				-2.9
5,640,158	-				+0.5
5,640,158	-				+0.1
5,640,301	-				-1.8
5,640,509	+		PP_4951	0.12	+0.5
5,640,509	+		PP_4951	0.12	-0.4
5,640,509	+		PP_4951	0.12	-0.1
5,640,510	-		PP_4951	0.12	-0.1
5,640,510	-		PP_4951	0.12	-4.1
5,640,510	-		PP_4951	0.12	-0.5
5,640,510	-		PP_4951	0.12	-4.2
5,640,510	-		PP_4951	0.12	+1.6
5,640,510	-		PP_4951	0.12	-0.1
5,640,510	-		PP_4951	0.12	+2.5
5,640,975	+		PP_4951	0.45	-1.9
5,640,976	-		PP_4951	0.45	-0.2
5,640,976	-		PP_4951	0.45	-0.5