Strain Fitness in Pseudomonas putida KT2440 around PP_4870

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,536,154	+				+2.2
5,536,167	+				+1.7
5,536,167	+				-3.5
5,537,024	+				+0.9
5,537,024	+				+0.2
5,537,025	-				-2.0
5,537,025	-				+0.3
5,537,025	-				+1.0
5,537,025	-				+0.3
5,537,025	-				-0.1
5,537,057	+				+0.2
5,537,127	+				+1.5
5,537,127	+				+1.3
5,537,191	-		PP_4870	0.14	+0.9
5,537,191	-		PP_4870	0.14	-0.2
5,537,301	+		PP_4870	0.39	-3.5
5,537,302	-		PP_4870	0.39	+0.4
5,537,472	+		PP_4870	0.77	+1.0
5,537,473	-		PP_4870	0.77	-2.9
5,537,558	+				-4.1
5,537,599	+				+0.9
5,537,599	+				+0.7
5,537,642	+				+0.7
5,537,643	-				+0.0
5,537,697	+				-5.0
5,537,697	+				+0.7
5,537,765	+				-1.1
5,537,765	+				-4.6
5,537,795	-				+1.8
5,537,931	-				-2.2
5,537,981	-				+0.5
5,538,040	+		PP_4871	0.20	+0.6
5,538,041	-		PP_4871	0.20	+2.2
5,538,041	-		PP_4871	0.20	-2.1
5,538,256	-		PP_4871	0.57	+2.2
5,538,343	+		PP_4871	0.71	+0.8
5,538,372	+		PP_4871	0.76	+1.5
5,538,372	+		PP_4871	0.76	+0.8
5,538,483	+				-2.8
5,538,484	-				-2.5