Strain Fitness in Pseudomonas putida KT2440 around PP_4738

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,388,642	+		PP_4737	0.77	+1.1
5,388,642	+		PP_4737	0.77	-1.3
5,388,642	+		PP_4737	0.77	-2.1
5,388,852	+		PP_4737	0.84	-0.7
5,388,853	-		PP_4737	0.84	+0.9
5,388,919	-		PP_4737	0.86	+0.3
5,388,919	-		PP_4737	0.86	-1.2
5,389,088	+				+1.1
5,389,088	+				-0.4
5,389,089	-				+0.5
5,389,124	+				+1.6
5,389,124	+				-4.1
5,389,125	-				-4.2
5,389,180	-				-2.3
5,389,194	-				+1.2
5,389,248	+				+0.2
5,389,249	-				+0.5
5,389,249	-				+0.9
5,389,263	+				+0.3
5,389,263	+				-3.9
5,389,264	-				-0.3
5,389,310	+				-2.1
5,389,311	-				+0.7
5,389,311	-				+0.6
5,389,311	-				+0.2
5,389,312	+				+1.9
5,389,312	+				+0.7
5,389,313	-				-0.7
5,389,313	-				+1.5
5,389,313	-				-2.8
5,389,313	-				-4.4
5,389,330	+				+1.3
5,389,331	-				+0.2
5,389,342	+				+2.4
5,389,416	-				+0.9
5,389,462	+				-3.6
5,389,462	+				-3.5
5,389,462	+				-4.3
5,389,463	-				+1.1
5,389,485	+				+1.4
5,389,521	+				-0.6
5,389,521	+				-4.7
5,389,521	+				-2.8
5,389,522	-				+2.0
5,389,583	+				-1.3
5,389,583	+				-3.5
5,389,584	-				+0.8
5,389,584	-				-0.5
5,389,842	+		PP_4738	0.76	-1.5
5,389,842	+		PP_4738	0.76	-0.4
5,389,843	-		PP_4738	0.76	-2.6
5,389,843	-		PP_4738	0.76	-0.1
5,389,843	-		PP_4738	0.76	-1.2
5,389,963	+				+0.3
5,389,965	+				-0.7
5,389,984	+				-1.8
5,390,501	+				+0.5
5,390,519	+				-0.1
5,390,519	+				-0.4
5,390,520	-				-3.7
5,390,520	-				-0.0
5,390,520	-				-3.6
5,390,520	-				+0.1
5,390,520	-				+1.7
5,390,565	-				+0.2
5,390,565	-				+0.5
5,390,617	+				-0.0
5,390,617	+				-4.0
5,390,618	-				+1.1
5,390,618	-				-0.3
5,390,631	-				+0.3
5,390,631	-				+0.7
5,390,765	+				-1.5
5,390,765	+				-2.8
5,390,773	+				-1.0
5,390,773	+				+0.6
5,390,878	+		PP_4739	0.45	+1.1
5,390,878	+		PP_4739	0.45	+0.1