Strain Fitness in Pseudomonas putida KT2440 around PP_4555

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,177,531	+		PP_4553	0.63	-3.7
5,177,938	-				+0.6
5,178,411	-		PP_4554	0.84	+0.6
5,178,548	-		PP_4555	0.11	+1.7
5,178,548	-		PP_4555	0.11	+1.4
5,178,548	-		PP_4555	0.11	+1.9
5,178,618	+		PP_4555	0.32	-0.4
5,178,692	+		PP_4555	0.53	+1.6
5,178,831	+				+1.3
5,178,831	+				+0.1
5,178,832	-				+0.8
5,178,832	-				+0.4
5,178,832	-				+0.2
5,178,846	+				-3.5
5,178,846	+				-0.6
5,178,847	-				-3.3
5,178,847	-				-1.0
5,178,869	-				+1.0
5,178,967	+		PP_4556	0.16	-1.3
5,178,967	+		PP_4556	0.16	+0.1
5,178,968	-		PP_4556	0.16	-0.9
5,178,968	-		PP_4556	0.16	-0.6
5,179,167	-		PP_4556	0.63	-4.6
5,179,329	+				-1.3
5,179,329	+				+0.3
5,179,346	-				-3.2
5,179,346	-				-0.4
5,179,346	-				-0.1
5,179,346	-				+1.5
5,179,381	+				-4.5
5,179,382	-				-4.3
5,179,382	-				+1.0
5,179,382	-				-0.7
5,179,394	+				-0.8
5,179,424	+				+0.2
5,179,431	+				+1.1
5,179,585	+		PP_4557	0.27	-2.9
5,179,585	+		PP_4557	0.27	+0.1
5,179,585	+		PP_4557	0.27	+1.0
5,179,585	+		PP_4557	0.27	-0.7
5,179,585	+		PP_4557	0.27	+0.7
5,179,586	-		PP_4557	0.28	-0.7
5,179,586	-		PP_4557	0.28	+0.3
5,179,586	-		PP_4557	0.28	-0.3
5,179,586	-		PP_4557	0.28	+0.7
5,179,586	-		PP_4557	0.28	+1.0
5,179,586	-		PP_4557	0.28	-0.2
5,179,603	-		PP_4557	0.34	-1.0
5,179,603	-		PP_4557	0.34	-0.2
5,179,603	-		PP_4557	0.34	-0.1
5,179,669	+		PP_4557	0.60	-2.1
5,179,669	+		PP_4557	0.60	+0.5
5,179,675	+		PP_4557	0.62	-3.6
5,179,676	-		PP_4557	0.62	+1.7
5,179,739	+		PP_4557	0.87	-1.2
5,179,739	+		PP_4557	0.87	+0.7
5,179,739	+		PP_4557	0.87	-4.1
5,179,740	-		PP_4557	0.87	+0.6
5,179,762	-				-0.7
5,179,816	-				+0.2
5,179,816	-				+0.4
5,179,816	-				-0.5
5,179,816	-				+0.8
5,179,816	-				-0.3
5,179,816	-				+1.6
5,179,848	+				+1.2
5,179,848	+				+0.9
5,179,848	+				-1.0