Strain Fitness in Pseudomonas putida KT2440 around PP_4524

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,137,960	+		PP_4523	0.15	-0.5
5,137,975	-		PP_4523	0.17	-0.7
5,137,975	-		PP_4523	0.17	+1.0
5,137,975	-		PP_4523	0.17	+0.5
5,138,036	+		PP_4523	0.23	+0.6
5,138,037	-		PP_4523	0.23	-0.5
5,138,150	+		PP_4523	0.35	+0.6
5,138,151	-		PP_4523	0.35	-4.2
5,138,263	-		PP_4523	0.47	+0.6
5,138,402	+		PP_4523	0.61	+1.0
5,138,402	+		PP_4523	0.61	+0.7
5,138,402	+		PP_4523	0.61	-1.1
5,138,532	-		PP_4523	0.75	-4.7
5,138,532	-		PP_4523	0.75	-1.2
5,138,532	-				-1.7
5,138,532	-		PP_4523	0.75	+0.9
5,138,532	-		PP_4523	0.75	+0.4
5,138,690	+				+0.7
5,138,777	+				-0.3
5,138,777	+				+0.8
5,138,886	+				+0.2
5,138,887	-				-0.3
5,138,887	-				-4.1
5,138,887	-				+0.7
5,138,931	+				-0.0
5,138,931	+				-3.8
5,138,931	+				-0.3
5,138,931	+				+0.9
5,138,932	-				+0.6
5,138,932	-				-0.2
5,138,932	-				+0.1
5,138,940	-				+1.4
5,138,940	-				+0.3
5,138,940	-				-0.3
5,138,955	+				+1.4
5,138,956	-				+1.4
5,139,002	+				+0.6
5,139,002	+				+0.5
5,139,002	+				+1.2
5,139,003	-				-0.4
5,139,003	-				-1.8
5,139,039	-				-0.2
5,139,039	-				-1.7
5,139,039	-				+0.2
5,139,039	-				-2.4
5,139,064	-		PP_4524	0.11	+0.0
5,139,104	+		PP_4524	0.14	+0.5
5,139,104	+		PP_4524	0.14	-1.9
5,139,104	+		PP_4524	0.14	-0.7
5,139,105	-		PP_4524	0.14	-1.6
5,139,223	-		PP_4524	0.23	-0.4
5,139,236	+		PP_4524	0.24	-3.9
5,139,236	+		PP_4524	0.24	-0.1
5,139,236	+		PP_4524	0.24	+1.1
5,139,237	-		PP_4524	0.24	+1.3
5,139,237	-		PP_4524	0.24	+0.7
5,139,237	-		PP_4524	0.24	+0.1
5,139,237	-		PP_4524	0.24	-0.4
5,139,237	-		PP_4524	0.24	-3.3
5,139,237	-		PP_4524	0.24	-2.2
5,139,237	-		PP_4524	0.24	-4.3
5,139,281	+		PP_4524	0.27	-0.1
5,139,281	+		PP_4524	0.27	+0.3
5,139,281	+		PP_4524	0.27	-1.1
5,139,387	+		PP_4524	0.35	-2.7
5,139,388	-		PP_4524	0.35	+1.4
5,139,395	+		PP_4524	0.35	-0.8
5,139,497	+		PP_4524	0.43	-0.5
5,139,498	-		PP_4524	0.43	-3.7
5,139,559	+		PP_4524	0.47	-0.9
5,139,559	+		PP_4524	0.47	+1.0
5,139,587	+		PP_4524	0.49	-3.6
5,139,588	-		PP_4524	0.49	+0.4
5,139,588	-		PP_4524	0.49	+0.5
5,139,588	-		PP_4524	0.49	-4.3
5,139,588	-		PP_4524	0.49	+1.0
5,139,588	-		PP_4524	0.49	+0.9
5,139,599	+		PP_4524	0.50	-0.5
5,139,599	+		PP_4524	0.50	+0.5
5,139,599	+		PP_4524	0.50	-0.8
5,139,698	+		PP_4524	0.57	-0.4
5,139,698	+		PP_4524	0.57	+2.7
5,139,698	+		PP_4524	0.57	-3.7
5,139,698	+		PP_4524	0.57	+1.1
5,139,699	-		PP_4524	0.57	-4.1
5,139,699	-		PP_4524	0.57	-5.1
5,139,710	+		PP_4524	0.58	+0.2
5,139,710	+		PP_4524	0.58	-1.3
5,139,710	+		PP_4524	0.58	-3.1
5,140,046	+		PP_4524	0.82	-4.8
5,140,046	+		PP_4524	0.82	-0.5
5,140,047	-		PP_4524	0.82	-0.5
5,140,048	+		PP_4524	0.83	+1.3
5,140,048	+		PP_4524	0.83	+0.1
5,140,202	+				+1.5
5,140,206	-				+1.8
5,140,206	-				-0.5
5,140,218	+				-2.6
5,140,313	+				-4.3
5,140,352	+				+0.8
5,140,544	-				-0.4
5,140,544	-				+1.3
5,140,544	-				-4.5
5,140,606	-				+0.0
5,140,620	+				+1.4
5,140,624	-				-5.1
5,140,647	+				+1.1
5,140,648	-				+0.2
5,140,648	-				-3.0
5,140,755	-				-0.5
5,140,910	-		PP_4525	0.27	+1.5
5,140,944	-		PP_4525	0.31	-3.1
5,141,070	+		PP_4525	0.45	+0.4
5,141,070	+		PP_4525	0.45	-0.2
5,141,219	-		PP_4525	0.62	-1.0
5,141,219	-		PP_4525	0.62	+0.2
5,141,231	-		PP_4525	0.63	-0.9
5,141,272	+		PP_4525	0.68	+0.8
5,141,272	+		PP_4525	0.68	-1.6
5,141,272	+		PP_4525	0.68	+1.1
5,141,272	+		PP_4525	0.68	+0.6
5,141,272	+		PP_4525	0.68	+1.0
5,141,272	+		PP_4525	0.68	-0.6
5,141,272	+		PP_4525	0.68	-1.1
5,141,272	+		PP_4525	0.68	-0.7
5,141,272	+		PP_4525	0.68	-3.4
5,141,272	+		PP_4525	0.68	-0.2
5,141,272	+		PP_4525	0.68	-3.9
5,141,273	-		PP_4525	0.68	-1.4