Strain Fitness in Pseudomonas putida KT2440 around PP_4515

Experiment: PUT 8 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4514 and PP_4515 are separated by 32 nucleotidesPP_4515 and PP_4516 are separated by 151 nucleotides PP_4514: PP_4514 - putative esterase of the alpha-beta hydrolase superfamily, at 5,126,448 to 5,128,634 _4514 PP_4515: PP_4515 - Transcriptional regulator, MarR family, at 5,128,667 to 5,129,104 _4515 PP_4516: PP_4516 - ATP-dependent DNA 3, at 5,129,256 to 5,131,403 _4516 Position (kb) 5128 5129 5130Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5127.675 kb on + strand, within PP_4514at 5127.676 kb on - strand, within PP_4514at 5127.819 kb on + strand, within PP_4514at 5127.831 kb on + strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.859 kb on - strand, within PP_4514at 5127.873 kb on + strand, within PP_4514at 5127.949 kb on - strand, within PP_4514at 5127.967 kb on + strand, within PP_4514at 5127.968 kb on - strand, within PP_4514at 5128.099 kb on - strand, within PP_4514at 5128.125 kb on + strand, within PP_4514at 5128.125 kb on + strand, within PP_4514at 5128.125 kb on + strand, within PP_4514at 5128.126 kb on - strand, within PP_4514at 5128.126 kb on - strand, within PP_4514at 5128.171 kb on - strand, within PP_4514at 5128.272 kb on + strand, within PP_4514at 5128.273 kb on - strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.425 kb on + strandat 5128.425 kb on + strandat 5128.425 kb on + strandat 5128.449 kb on + strandat 5128.450 kb on - strandat 5128.512 kb on + strandat 5128.512 kb on + strandat 5128.513 kb on - strandat 5128.556 kb on - strandat 5128.556 kb on - strandat 5128.575 kb on + strandat 5128.608 kb on + strandat 5128.711 kb on + strand, within PP_4515at 5128.712 kb on - strand, within PP_4515at 5128.754 kb on + strand, within PP_4515at 5128.754 kb on + strand, within PP_4515at 5128.817 kb on + strand, within PP_4515at 5128.817 kb on + strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5129.104 kb on + strandat 5129.104 kb on + strandat 5129.121 kb on + strandat 5129.121 kb on + strandat 5129.121 kb on + strandat 5129.127 kb on + strandat 5129.127 kb on + strandat 5129.128 kb on - strandat 5129.131 kb on + strandat 5129.135 kb on - strandat 5129.158 kb on + strandat 5129.193 kb on + strandat 5129.296 kb on + strandat 5129.296 kb on + strandat 5129.297 kb on - strandat 5129.297 kb on - strandat 5129.297 kb on - strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.302 kb on - strandat 5129.302 kb on - strandat 5129.471 kb on + strand, within PP_4516at 5129.472 kb on - strand, within PP_4516at 5129.472 kb on - strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.632 kb on + strand, within PP_4516at 5129.740 kb on + strand, within PP_4516at 5129.740 kb on + strand, within PP_4516

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PUT 8 MOI 1
remove
5,127,675 + PP_4514 0.56 -0.1
5,127,676 - PP_4514 0.56 +0.4
5,127,819 + PP_4514 0.63 +0.7
5,127,831 + PP_4514 0.63 +0.3
5,127,832 - PP_4514 0.63 -0.2
5,127,832 - PP_4514 0.63 +0.8
5,127,832 - PP_4514 0.63 +0.7
5,127,832 - PP_4514 0.63 +0.6
5,127,832 - PP_4514 0.63 +0.5
5,127,859 - PP_4514 0.65 -2.0
5,127,873 + PP_4514 0.65 +0.5
5,127,949 - PP_4514 0.69 +0.8
5,127,967 + PP_4514 0.69 +0.4
5,127,968 - PP_4514 0.70 -0.4
5,128,099 - PP_4514 0.75 -0.8
5,128,125 + PP_4514 0.77 +1.4
5,128,125 + PP_4514 0.77 +0.9
5,128,125 + PP_4514 0.77 +0.9
5,128,126 - PP_4514 0.77 -0.8
5,128,126 - PP_4514 0.77 +0.6
5,128,171 - PP_4514 0.79 -2.9
5,128,272 + PP_4514 0.83 -1.2
5,128,273 - PP_4514 0.83 -4.2
5,128,398 + PP_4514 0.89 +2.6
5,128,398 + PP_4514 0.89 -1.2
5,128,398 + PP_4514 0.89 -0.1
5,128,399 - PP_4514 0.89 +0.8
5,128,399 - PP_4514 0.89 -3.6
5,128,399 - PP_4514 0.89 +1.0
5,128,399 - PP_4514 0.89 -0.4
5,128,425 + +1.2
5,128,425 + +0.9
5,128,425 + -0.2
5,128,449 + +0.5
5,128,450 - -0.2
5,128,512 + +0.7
5,128,512 + -1.4
5,128,513 - -0.0
5,128,556 - +0.7
5,128,556 - -4.6
5,128,575 + +1.8
5,128,608 + +0.3
5,128,711 + PP_4515 0.10 -4.3
5,128,712 - PP_4515 0.10 -3.5
5,128,754 + PP_4515 0.20 -1.6
5,128,754 + PP_4515 0.20 -5.0
5,128,817 + PP_4515 0.34 -4.5
5,128,817 + PP_4515 0.34 +0.3
5,128,818 - PP_4515 0.34 -4.7
5,128,818 - PP_4515 0.34 -4.5
5,128,818 - PP_4515 0.34 -1.0
5,128,818 - PP_4515 0.34 -1.3
5,128,922 + PP_4515 0.58 -4.1
5,128,922 + PP_4515 0.58 -4.1
5,128,922 + PP_4515 0.58 -4.0
5,128,923 - PP_4515 0.58 -4.2
5,128,923 - PP_4515 0.58 -0.1
5,128,923 - PP_4515 0.58 +0.1
5,129,104 + -4.1
5,129,104 + -1.7
5,129,121 + -3.9
5,129,121 + -3.6
5,129,121 + -0.4
5,129,127 + -1.3
5,129,127 + -4.6
5,129,128 - +0.0
5,129,131 + -4.2
5,129,135 - +1.6
5,129,158 + -0.0
5,129,193 + +0.6
5,129,296 + +0.3
5,129,296 + -1.9
5,129,297 - +0.3
5,129,297 - -2.8
5,129,297 - +1.0
5,129,301 + -3.3
5,129,301 + -0.1
5,129,301 + -4.1
5,129,301 + +0.8
5,129,302 - +0.4
5,129,302 - +1.2
5,129,471 + PP_4516 0.10 -0.4
5,129,472 - PP_4516 0.10 -0.7
5,129,472 - PP_4516 0.10 +0.8
5,129,473 + PP_4516 0.10 +1.0
5,129,473 + PP_4516 0.10 -0.3
5,129,473 + PP_4516 0.10 -4.2
5,129,473 + PP_4516 0.10 +0.5
5,129,473 + PP_4516 0.10 +0.4
5,129,473 + PP_4516 0.10 +1.8
5,129,473 + PP_4516 0.10 -0.4
5,129,474 - PP_4516 0.10 +0.6
5,129,474 - PP_4516 0.10 -1.6
5,129,474 - PP_4516 0.10 -0.2
5,129,474 - PP_4516 0.10 -3.3
5,129,474 - PP_4516 0.10 -1.1
5,129,474 - PP_4516 0.10 -4.4
5,129,474 - PP_4516 0.10 +0.3
5,129,632 + PP_4516 0.18 -0.3
5,129,740 + PP_4516 0.23 +0.0
5,129,740 + PP_4516 0.23 +1.3

Or see this region's nucleotide sequence