Strain Fitness in Pseudomonas putida KT2440 around PP_4432

Experiment: PUT 8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4431 and PP_4432 are separated by 49 nucleotidesPP_4432 and PP_4433 are separated by 438 nucleotides PP_4431: PP_4431 - Ornithine cyclodeaminase 1, at 5,026,691 to 5,027,683 _4431 PP_4432: PP_4432 - putative Xaa-Pro aminopeptidase, at 5,027,733 to 5,028,923 _4432 PP_4433: PP_4433 - Amino acid MFS transporter, at 5,029,362 to 5,030,714 _4433 Position (kb) 5027 5028 5029Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5026.738 kb on - strandat 5026.748 kb on - strandat 5026.756 kb on + strandat 5026.756 kb on + strandat 5026.757 kb on - strandat 5026.765 kb on - strandat 5026.871 kb on + strand, within PP_4431at 5026.871 kb on + strand, within PP_4431at 5026.871 kb on + strand, within PP_4431at 5026.872 kb on - strand, within PP_4431at 5026.935 kb on + strand, within PP_4431at 5026.941 kb on + strand, within PP_4431at 5026.941 kb on + strand, within PP_4431at 5027.004 kb on + strand, within PP_4431at 5027.004 kb on + strand, within PP_4431at 5027.004 kb on + strand, within PP_4431at 5027.018 kb on + strand, within PP_4431at 5027.018 kb on + strand, within PP_4431at 5027.018 kb on + strand, within PP_4431at 5027.019 kb on - strand, within PP_4431at 5027.159 kb on - strand, within PP_4431at 5027.176 kb on - strand, within PP_4431at 5027.183 kb on - strand, within PP_4431at 5027.220 kb on + strand, within PP_4431at 5027.220 kb on + strand, within PP_4431at 5027.221 kb on - strand, within PP_4431at 5027.232 kb on - strand, within PP_4431at 5027.232 kb on - strand, within PP_4431at 5027.326 kb on - strand, within PP_4431at 5027.356 kb on + strand, within PP_4431at 5027.365 kb on + strand, within PP_4431at 5027.366 kb on - strand, within PP_4431at 5027.409 kb on + strand, within PP_4431at 5027.409 kb on + strand, within PP_4431at 5027.409 kb on + strand, within PP_4431at 5027.409 kb on + strand, within PP_4431at 5027.409 kb on + strand, within PP_4431at 5027.412 kb on + strand, within PP_4431at 5027.412 kb on + strand, within PP_4431at 5027.412 kb on + strand, within PP_4431at 5027.413 kb on - strand, within PP_4431at 5027.413 kb on - strand, within PP_4431at 5027.429 kb on + strand, within PP_4431at 5027.429 kb on + strand, within PP_4431at 5027.430 kb on - strand, within PP_4431at 5027.430 kb on - strand, within PP_4431at 5027.430 kb on - strand, within PP_4431at 5027.430 kb on - strand, within PP_4431at 5027.430 kb on - strand, within PP_4431at 5027.577 kb on + strand, within PP_4431at 5027.577 kb on + strand, within PP_4431at 5027.577 kb on + strand, within PP_4431at 5027.672 kb on + strandat 5027.673 kb on - strandat 5027.701 kb on + strandat 5027.701 kb on + strandat 5027.702 kb on - strandat 5027.702 kb on - strandat 5027.709 kb on + strandat 5027.709 kb on + strandat 5027.762 kb on + strandat 5027.763 kb on - strandat 5027.775 kb on + strandat 5027.816 kb on + strandat 5027.816 kb on + strandat 5027.817 kb on - strandat 5027.817 kb on - strandat 5027.875 kb on - strand, within PP_4432at 5027.892 kb on + strand, within PP_4432at 5027.892 kb on + strand, within PP_4432at 5027.908 kb on + strand, within PP_4432at 5027.940 kb on + strand, within PP_4432at 5027.940 kb on + strand, within PP_4432at 5027.941 kb on - strand, within PP_4432at 5027.975 kb on + strand, within PP_4432at 5027.975 kb on + strand, within PP_4432at 5027.975 kb on + strand, within PP_4432at 5027.976 kb on - strand, within PP_4432at 5027.976 kb on - strand, within PP_4432at 5027.976 kb on - strand, within PP_4432at 5027.976 kb on - strand, within PP_4432at 5027.976 kb on - strand, within PP_4432at 5027.976 kb on - strandat 5027.976 kb on - strand, within PP_4432at 5028.017 kb on + strand, within PP_4432at 5028.018 kb on - strand, within PP_4432at 5028.018 kb on - strand, within PP_4432at 5028.021 kb on + strand, within PP_4432at 5028.021 kb on + strand, within PP_4432at 5028.021 kb on + strandat 5028.021 kb on + strand, within PP_4432at 5028.021 kb on + strand, within PP_4432at 5028.021 kb on + strand, within PP_4432at 5028.021 kb on + strand, within PP_4432at 5028.021 kb on + strand, within PP_4432at 5028.022 kb on - strand, within PP_4432at 5028.022 kb on - strand, within PP_4432at 5028.054 kb on + strand, within PP_4432at 5028.054 kb on + strand, within PP_4432at 5028.055 kb on - strand, within PP_4432at 5028.055 kb on - strand, within PP_4432at 5028.055 kb on - strand, within PP_4432at 5028.101 kb on + strand, within PP_4432at 5028.123 kb on + strand, within PP_4432at 5028.123 kb on + strand, within PP_4432at 5028.123 kb on + strand, within PP_4432at 5028.123 kb on + strand, within PP_4432at 5028.124 kb on - strand, within PP_4432at 5028.124 kb on - strand, within PP_4432at 5028.126 kb on + strand, within PP_4432at 5028.127 kb on - strand, within PP_4432at 5028.127 kb on - strand, within PP_4432at 5028.144 kb on + strand, within PP_4432at 5028.144 kb on + strand, within PP_4432at 5028.144 kb on + strand, within PP_4432at 5028.144 kb on + strand, within PP_4432at 5028.145 kb on - strand, within PP_4432at 5028.145 kb on - strand, within PP_4432at 5028.145 kb on - strand, within PP_4432at 5028.145 kb on - strand, within PP_4432at 5028.243 kb on + strand, within PP_4432at 5028.244 kb on - strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strandat 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.342 kb on + strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.343 kb on - strand, within PP_4432at 5028.373 kb on - strand, within PP_4432at 5028.373 kb on - strandat 5028.384 kb on + strand, within PP_4432at 5028.425 kb on + strand, within PP_4432at 5028.501 kb on + strand, within PP_4432at 5028.502 kb on - strand, within PP_4432at 5028.502 kb on - strand, within PP_4432at 5028.502 kb on - strand, within PP_4432at 5028.502 kb on - strand, within PP_4432at 5028.502 kb on - strand, within PP_4432at 5028.538 kb on - strand, within PP_4432at 5028.641 kb on + strand, within PP_4432at 5028.724 kb on - strand, within PP_4432at 5028.724 kb on - strand, within PP_4432at 5028.791 kb on + strand, within PP_4432at 5028.791 kb on + strand, within PP_4432at 5028.791 kb on + strand, within PP_4432at 5028.792 kb on - strand, within PP_4432at 5028.817 kb on + strandat 5028.817 kb on + strandat 5028.818 kb on - strandat 5028.818 kb on - strandat 5028.818 kb on - strandat 5028.870 kb on - strandat 5028.949 kb on + strandat 5028.950 kb on - strandat 5029.025 kb on - strandat 5029.095 kb on + strandat 5029.110 kb on - strandat 5029.135 kb on - strandat 5029.135 kb on - strandat 5029.367 kb on + strandat 5029.371 kb on - strandat 5029.459 kb on + strandat 5029.494 kb on + strandat 5029.495 kb on - strandat 5029.500 kb on + strand, within PP_4433at 5029.610 kb on + strand, within PP_4433at 5029.672 kb on + strand, within PP_4433at 5029.673 kb on - strand, within PP_4433at 5029.673 kb on - strand, within PP_4433at 5029.673 kb on - strand, within PP_4433at 5029.673 kb on - strand, within PP_4433at 5029.685 kb on - strand, within PP_4433at 5029.694 kb on + strand, within PP_4433at 5029.712 kb on + strand, within PP_4433at 5029.712 kb on + strand, within PP_4433at 5029.712 kb on + strand, within PP_4433at 5029.713 kb on - strand, within PP_4433at 5029.713 kb on - strand, within PP_4433at 5029.717 kb on - strand, within PP_4433at 5029.736 kb on - strand, within PP_4433at 5029.745 kb on - strand, within PP_4433at 5029.745 kb on - strand, within PP_4433at 5029.751 kb on + strand, within PP_4433at 5029.794 kb on + strand, within PP_4433at 5029.795 kb on - strand, within PP_4433at 5029.809 kb on - strand, within PP_4433at 5029.825 kb on - strand, within PP_4433at 5029.852 kb on - strand, within PP_4433

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Per-strain Table

Position Strand Gene LocusTag Fraction PUT 8 MOI 1
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5,026,738 - +0.0
5,026,748 - +1.1
5,026,756 + -1.3
5,026,756 + -0.4
5,026,757 - +0.6
5,026,765 - -1.1
5,026,871 + PP_4431 0.18 +1.9
5,026,871 + PP_4431 0.18 +1.4
5,026,871 + PP_4431 0.18 +1.9
5,026,872 - PP_4431 0.18 -0.0
5,026,935 + PP_4431 0.25 +1.0
5,026,941 + PP_4431 0.25 -5.0
5,026,941 + PP_4431 0.25 -1.0
5,027,004 + PP_4431 0.32 -2.7
5,027,004 + PP_4431 0.32 +0.4
5,027,004 + PP_4431 0.32 +1.0
5,027,018 + PP_4431 0.33 +0.8
5,027,018 + PP_4431 0.33 -0.1
5,027,018 + PP_4431 0.33 -4.4
5,027,019 - PP_4431 0.33 -0.5
5,027,159 - PP_4431 0.47 -3.1
5,027,176 - PP_4431 0.49 +0.8
5,027,183 - PP_4431 0.50 -0.0
5,027,220 + PP_4431 0.53 +0.1
5,027,220 + PP_4431 0.53 -0.8
5,027,221 - PP_4431 0.53 +2.0
5,027,232 - PP_4431 0.54 -0.7
5,027,232 - PP_4431 0.54 +1.0
5,027,326 - PP_4431 0.64 -0.0
5,027,356 + PP_4431 0.67 +1.3
5,027,365 + PP_4431 0.68 -0.4
5,027,366 - PP_4431 0.68 -0.1
5,027,409 + PP_4431 0.72 +0.1
5,027,409 + PP_4431 0.72 -0.2
5,027,409 + PP_4431 0.72 -1.9
5,027,409 + PP_4431 0.72 -4.4
5,027,409 + PP_4431 0.72 +0.2
5,027,412 + PP_4431 0.73 +0.4
5,027,412 + PP_4431 0.73 -0.8
5,027,412 + PP_4431 0.73 +1.3
5,027,413 - PP_4431 0.73 -1.2
5,027,413 - PP_4431 0.73 +0.7
5,027,429 + PP_4431 0.74 -3.4
5,027,429 + PP_4431 0.74 -0.6
5,027,430 - PP_4431 0.74 -4.7
5,027,430 - PP_4431 0.74 -0.6
5,027,430 - PP_4431 0.74 +0.4
5,027,430 - PP_4431 0.74 -0.5
5,027,430 - PP_4431 0.74 -4.6
5,027,577 + PP_4431 0.89 +1.9
5,027,577 + PP_4431 0.89 -1.1
5,027,577 + PP_4431 0.89 -3.7
5,027,672 + -3.5
5,027,673 - -4.5
5,027,701 + +1.8
5,027,701 + -0.0
5,027,702 - -1.0
5,027,702 - -4.7
5,027,709 + +1.0
5,027,709 + -2.2
5,027,762 + -0.7
5,027,763 - +0.8
5,027,775 + +0.3
5,027,816 + -0.2
5,027,816 + +0.7
5,027,817 - +0.5
5,027,817 - -0.8
5,027,875 - PP_4432 0.12 -1.2
5,027,892 + PP_4432 0.13 -1.0
5,027,892 + PP_4432 0.13 -0.7
5,027,908 + PP_4432 0.15 -4.2
5,027,940 + PP_4432 0.17 -0.3
5,027,940 + PP_4432 0.17 -1.5
5,027,941 - PP_4432 0.17 -4.4
5,027,975 + PP_4432 0.20 -3.3
5,027,975 + PP_4432 0.20 -0.6
5,027,975 + PP_4432 0.20 -4.7
5,027,976 - PP_4432 0.20 +0.2
5,027,976 - PP_4432 0.20 -4.1
5,027,976 - PP_4432 0.20 +0.1
5,027,976 - PP_4432 0.20 +1.0
5,027,976 - PP_4432 0.20 +1.3
5,027,976 - +0.5
5,027,976 - PP_4432 0.20 -0.2
5,028,017 + PP_4432 0.24 +1.4
5,028,018 - PP_4432 0.24 -1.1
5,028,018 - PP_4432 0.24 -0.2
5,028,021 + PP_4432 0.24 -3.0
5,028,021 + PP_4432 0.24 -3.4
5,028,021 + +1.2
5,028,021 + PP_4432 0.24 +1.4
5,028,021 + PP_4432 0.24 +0.6
5,028,021 + PP_4432 0.24 +0.5
5,028,021 + PP_4432 0.24 -3.5
5,028,021 + PP_4432 0.24 +0.4
5,028,022 - PP_4432 0.24 +0.7
5,028,022 - PP_4432 0.24 -1.6
5,028,054 + PP_4432 0.27 -0.1
5,028,054 + PP_4432 0.27 +0.7
5,028,055 - PP_4432 0.27 -0.7
5,028,055 - PP_4432 0.27 -4.2
5,028,055 - PP_4432 0.27 -0.2
5,028,101 + PP_4432 0.31 +0.3
5,028,123 + PP_4432 0.33 +1.7
5,028,123 + PP_4432 0.33 -0.4
5,028,123 + PP_4432 0.33 +0.5
5,028,123 + PP_4432 0.33 -0.4
5,028,124 - PP_4432 0.33 +0.0
5,028,124 - PP_4432 0.33 -1.5
5,028,126 + PP_4432 0.33 +1.8
5,028,127 - PP_4432 0.33 +1.5
5,028,127 - PP_4432 0.33 -2.3
5,028,144 + PP_4432 0.35 +1.1
5,028,144 + PP_4432 0.35 -0.1
5,028,144 + PP_4432 0.35 +1.6
5,028,144 + PP_4432 0.35 -4.5
5,028,145 - PP_4432 0.35 -1.7
5,028,145 - PP_4432 0.35 +1.0
5,028,145 - PP_4432 0.35 -4.6
5,028,145 - PP_4432 0.35 +0.5
5,028,243 + PP_4432 0.43 +0.4
5,028,244 - PP_4432 0.43 +0.5
5,028,342 + PP_4432 0.51 -1.2
5,028,342 + PP_4432 0.51 -4.2
5,028,342 + -1.6
5,028,342 + PP_4432 0.51 -1.5
5,028,342 + PP_4432 0.51 -0.7
5,028,342 + PP_4432 0.51 -3.3
5,028,342 + PP_4432 0.51 -3.1
5,028,342 + PP_4432 0.51 -4.5
5,028,342 + PP_4432 0.51 -1.2
5,028,342 + PP_4432 0.51 -4.0
5,028,343 - PP_4432 0.51 -1.6
5,028,343 - PP_4432 0.51 +0.5
5,028,343 - PP_4432 0.51 -2.6
5,028,343 - PP_4432 0.51 +0.6
5,028,343 - PP_4432 0.51 -0.6
5,028,343 - PP_4432 0.51 -4.1
5,028,343 - PP_4432 0.51 -3.9
5,028,373 - PP_4432 0.54 +3.3
5,028,373 - -0.5
5,028,384 + PP_4432 0.55 +0.4
5,028,425 + PP_4432 0.58 -0.7
5,028,501 + PP_4432 0.64 +1.0
5,028,502 - PP_4432 0.65 +0.2
5,028,502 - PP_4432 0.65 -0.5
5,028,502 - PP_4432 0.65 +0.1
5,028,502 - PP_4432 0.65 +0.4
5,028,502 - PP_4432 0.65 +0.0
5,028,538 - PP_4432 0.68 -2.3
5,028,641 + PP_4432 0.76 -1.5
5,028,724 - PP_4432 0.83 +0.8
5,028,724 - PP_4432 0.83 -3.0
5,028,791 + PP_4432 0.89 +0.4
5,028,791 + PP_4432 0.89 -0.6
5,028,791 + PP_4432 0.89 -0.1
5,028,792 - PP_4432 0.89 -1.3
5,028,817 + +3.3
5,028,817 + -0.5
5,028,818 - +0.2
5,028,818 - +0.3
5,028,818 - -2.0
5,028,870 - -0.5
5,028,949 + -5.2
5,028,950 - -3.5
5,029,025 - +0.3
5,029,095 + -0.1
5,029,110 - +0.3
5,029,135 - +1.7
5,029,135 - +1.3
5,029,367 + -0.6
5,029,371 - -3.7
5,029,459 + -0.9
5,029,494 + -1.4
5,029,495 - -3.4
5,029,500 + PP_4433 0.10 -0.5
5,029,610 + PP_4433 0.18 +1.1
5,029,672 + PP_4433 0.23 -3.4
5,029,673 - PP_4433 0.23 +0.0
5,029,673 - PP_4433 0.23 -0.5
5,029,673 - PP_4433 0.23 -0.9
5,029,673 - PP_4433 0.23 +0.7
5,029,685 - PP_4433 0.24 -0.7
5,029,694 + PP_4433 0.25 +0.1
5,029,712 + PP_4433 0.26 +1.2
5,029,712 + PP_4433 0.26 -0.6
5,029,712 + PP_4433 0.26 +1.6
5,029,713 - PP_4433 0.26 -1.1
5,029,713 - PP_4433 0.26 +2.8
5,029,717 - PP_4433 0.26 +1.0
5,029,736 - PP_4433 0.28 -0.5
5,029,745 - PP_4433 0.28 +1.0
5,029,745 - PP_4433 0.28 -3.5
5,029,751 + PP_4433 0.29 -3.6
5,029,794 + PP_4433 0.32 -3.0
5,029,795 - PP_4433 0.32 -2.9
5,029,809 - PP_4433 0.33 +1.2
5,029,825 - PP_4433 0.34 +0.4
5,029,852 - PP_4433 0.36 -2.8

Or see this region's nucleotide sequence