Strain Fitness in Pseudomonas putida KT2440 around PP_4409

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
5,001,398	+				+2.5
5,001,466	+				-1.4
5,001,467	-				-0.2
5,001,467	-				+0.4
5,001,491	+				+0.6
5,001,491	+				-1.0
5,001,491	+				-0.6
5,001,574	+				-2.4
5,001,586	-				+0.5
5,001,612	-				+0.2
5,001,612	-				+1.0
5,001,702	-				-3.8
5,002,100	+				-0.6
5,002,271	+				-1.1
5,002,280	-				-3.4
5,002,432	-		PP_4409	0.15	+0.2
5,002,454	+		PP_4409	0.17	+3.0
5,002,454	+		PP_4409	0.17	-2.4
5,002,719	+		PP_4409	0.35	-1.1
5,002,720	-		PP_4409	0.35	+0.7
5,002,813	+		PP_4409	0.42	+2.1
5,003,128	-		PP_4409	0.64	+0.7
5,003,146	+		PP_4409	0.65	+2.2
5,003,223	-		PP_4409	0.70	-2.6
5,003,352	+		PP_4409	0.79	+0.4
5,003,353	-		PP_4409	0.79	+1.2
5,003,390	-		PP_4409	0.82	-2.3
5,003,394	-		PP_4409	0.82	-1.7
5,003,654	-				-3.3
5,004,034	+		PP_4410	0.12	-3.7
5,004,187	+		PP_4410	0.16	-2.6
5,004,188	-		PP_4410	0.16	+0.3
5,004,470	-		PP_4410	0.25	-0.4
5,004,534	-		PP_4410	0.27	+0.8
5,004,568	+		PP_4410	0.28	+0.7