Strain Fitness in Pseudomonas putida KT2440 around PP_3989

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
4,499,015	+		PP_3988	0.52	+0.6
4,499,015	+		PP_3988	0.52	+0.1
4,499,037	+		PP_3988	0.53	+0.4
4,499,121	+		PP_3988	0.57	-1.2
4,499,121	+		PP_3988	0.57	-3.8
4,499,128	-		PP_3988	0.57	+1.1
4,499,213	-		PP_3988	0.61	-2.8
4,499,674	+		PP_3988	0.84	-1.2
4,499,721	+		PP_3988	0.86	+1.2
4,499,908	+				+2.2
4,500,005	+				-3.9
4,500,119	+				-3.3
4,500,173	+		PP_3989	0.15	-3.2
4,500,302	+		PP_3989	0.27	-0.8
4,500,679	+		PP_3989	0.63	-3.0
4,500,725	+				-1.0
4,500,762	+		PP_3989	0.71	-3.7
4,500,814	+		PP_3989	0.76	+1.7
4,500,814	+		PP_3989	0.76	-0.0
4,500,814	+		PP_3989	0.76	-4.0
4,500,837	+		PP_3989	0.79	+0.2
4,500,837	+		PP_3989	0.79	-4.4
4,500,883	+		PP_3989	0.83	-1.5
4,501,097	-				+0.3
4,501,102	-				-3.3
4,501,269	-				-3.5
4,501,492	-				-2.5
4,501,492	-				+1.7
4,501,492	-				-0.2
4,501,520	+				-3.6
4,501,520	+				-3.3
4,501,521	-				-0.3
4,501,552	+				-4.7
4,501,553	-				-3.2
4,501,615	+		PP_3990	0.12	-3.9
4,501,615	+		PP_3990	0.12	-4.3
4,501,616	-		PP_3990	0.12	+0.4
4,501,616	-		PP_3990	0.12	-1.1
4,501,632	+		PP_3990	0.14	-2.6
4,501,710	-		PP_3990	0.26	+1.0
4,501,720	+		PP_3990	0.27	+0.0
4,501,720	+		PP_3990	0.27	+1.5
4,501,721	-		PP_3990	0.27	+1.5
4,501,738	-		PP_3990	0.30	+0.3
4,501,859	+		PP_3990	0.48	-0.5
4,501,860	-		PP_3990	0.48	+0.3
4,501,912	+		PP_3990	0.56	+1.3
4,501,912	+		PP_3990	0.56	+0.4
4,501,912	+		PP_3990	0.56	-3.7
4,501,913	-		PP_3990	0.56	-3.1
4,501,913	-		PP_3990	0.56	-2.2
4,501,913	-		PP_3990	0.56	+0.5
4,502,035	-		PP_3990	0.74	+1.4