Strain Fitness in Pseudomonas putida KT2440 around PP_3669

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
4,169,317	-		PP_3668	0.74	-0.7
4,169,351	+		PP_3668	0.76	+0.0
4,169,351	+		PP_3668	0.76	+0.2
4,169,351	+		PP_3668	0.76	+0.6
4,169,351	+		PP_3668	0.76	+0.4
4,169,606	+				+0.9
4,169,619	+		PP_3668	0.88	+0.6
4,169,900	+				-4.3
4,169,932	+				-1.7
4,169,932	+				-0.3
4,169,968	+				-3.6
4,169,968	+				+0.3
4,169,969	-				-1.6
4,169,971	+				+1.1
4,169,972	-				+2.9
4,169,987	+				+0.1
4,169,987	+				-0.5
4,169,987	+				+1.0
4,169,987	+				+0.5
4,170,110	+				+0.7
4,170,110	+				-0.8
4,170,110	+				+2.3
4,170,110	+				+0.9
4,170,111	-				-4.2
4,170,113	+				-1.4
4,170,113	+				+1.1
4,170,113	+				-3.4
4,170,114	-				+0.0
4,170,114	-				-2.1
4,170,114	-				-0.3
4,170,114	-				+0.7
4,170,114	-				+0.4
4,170,114	-				+1.7
4,170,114	-				-0.2
4,170,114	-				+1.4
4,170,136	-				-0.2
4,170,136	-				-3.7
4,170,209	+				-0.9
4,170,209	+				-0.9
4,170,209	+				-2.1
4,170,209	+				-3.8
4,170,209	+				-1.3
4,170,209	+				-0.0
4,170,209	+				+1.9
4,170,209	+				-3.7
4,170,210	-				+0.6
4,170,210	-				+0.9
4,170,210	-				-0.2
4,170,210	-				-2.3
4,170,210	-				-2.8
4,170,210	-				+1.5
4,170,241	+				-0.7
4,170,380	+		PP_3669	0.11	-1.6
4,170,674	-		PP_3669	0.44	-0.3
4,170,674	-		PP_3669	0.44	-3.7
4,170,674	-		PP_3669	0.44	+0.7
4,170,733	+		PP_3669	0.50	-0.0
4,170,733	+		PP_3669	0.50	+0.5
4,170,734	-		PP_3669	0.50	-5.2
4,170,744	+		PP_3669	0.51	-1.8
4,170,744	+		PP_3669	0.51	-1.1
4,170,744	+		PP_3669	0.51	-2.2
4,170,744	+		PP_3669	0.51	-4.0
4,170,744	+		PP_3669	0.51	+0.4
4,170,744	+		PP_3669	0.51	+0.8
4,170,745	-		PP_3669	0.51	+1.8
4,170,745	-		PP_3669	0.51	-0.5
4,170,745	-		PP_3669	0.51	-0.9
4,170,746	+		PP_3669	0.52	-0.8
4,170,747	-		PP_3669	0.52	+0.3
4,170,747	-		PP_3669	0.52	-4.2
4,170,747	-		PP_3669	0.52	+0.9
4,170,793	+		PP_3669	0.57	+0.2
4,170,793	+		PP_3669	0.57	-0.2
4,170,794	-		PP_3669	0.57	+0.3
4,170,794	-		PP_3669	0.57	-2.8
4,170,794	-		PP_3669	0.57	+0.8
4,170,794	-		PP_3669	0.57	+0.2
4,170,794	-		PP_3669	0.57	-3.3
4,170,794	-		PP_3669	0.57	-4.0
4,170,794	-		PP_3669	0.57	-0.2
4,170,799	+		PP_3669	0.57	-0.7
4,170,850	-		PP_3669	0.63	-3.0
4,171,020	+		PP_3669	0.82	-0.0
4,171,020	+		PP_3669	0.82	-1.9
4,171,020	+		PP_3669	0.82	+0.2
4,171,020	+		PP_3669	0.82	+0.7
4,171,021	-		PP_3669	0.82	+1.4
4,171,214	-				-3.0
4,171,223	-				+0.4
4,171,223	-				-3.4
4,171,245	+				+0.1
4,171,246	-				-0.7
4,171,335	+		PP_3670	0.10	+0.0
4,171,554	+		PP_3670	0.35	-0.2
4,171,555	-		PP_3670	0.35	+0.0
4,171,611	+		PP_3670	0.42	+1.0
4,171,612	-		PP_3670	0.42	+0.8
4,171,612	-		PP_3670	0.42	-0.2
4,171,612	-		PP_3670	0.42	-0.8
4,171,612	-		PP_3670	0.42	-1.2
4,171,661	-		PP_3670	0.47	-0.5
4,171,702	+		PP_3670	0.52	+0.3
4,171,703	-		PP_3670	0.52	-0.0
4,171,827	+		PP_3670	0.66	-0.4
4,171,828	-		PP_3670	0.66	-3.5
4,171,828	-		PP_3670	0.66	+1.1
4,171,893	-		PP_3670	0.74	+0.0
4,171,971	+		PP_3670	0.83	-3.8
4,171,971	+		PP_3670	0.83	-4.2
4,171,972	-		PP_3670	0.83	+0.1
4,171,972	-		PP_3670	0.83	+0.2
4,171,972	-		PP_3670	0.83	+0.5