Strain Fitness in Pseudomonas putida KT2440 around PP_3331

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,769,606	-		PP_3330	0.55	-0.9
3,769,771	+		PP_3330	0.62	-4.6
3,769,771	+		PP_3330	0.62	-0.1
3,769,771	+		PP_3330	0.62	-4.2
3,769,771	+		PP_3330	0.62	-2.6
3,769,772	-		PP_3330	0.62	+1.1
3,769,772	-		PP_3330	0.62	-0.2
3,769,887	+		PP_3330	0.67	+0.5
3,769,887	+		PP_3330	0.67	+0.3
3,769,888	-		PP_3330	0.67	+1.0
3,769,914	+		PP_3330	0.69	+0.1
3,769,914	+		PP_3330	0.69	+1.7
3,769,915	-		PP_3330	0.69	+1.0
3,769,923	+		PP_3330	0.69	-2.4
3,770,020	+		PP_3330	0.73	+1.0
3,770,074	-		PP_3330	0.76	-0.6
3,770,093	+		PP_3330	0.77	-0.1
3,770,094	-		PP_3330	0.77	+0.8
3,770,094	-		PP_3330	0.77	-0.7
3,770,225	-		PP_3330	0.83	-0.3
3,770,235	+		PP_3330	0.83	+2.2
3,770,236	-		PP_3330	0.83	+1.4
3,770,334	+		PP_3330	0.88	-0.5
3,770,335	-		PP_3330	0.88	-0.9
3,770,335	-		PP_3330	0.88	-3.5
3,770,376	+		PP_3330	0.90	+0.4
3,770,377	-		PP_3330	0.90	+1.6
3,770,377	-		PP_3330	0.90	-3.2
3,770,428	-				+1.2
3,770,436	+				+0.8
3,770,514	+				+1.5
3,770,514	+				+0.5
3,770,515	-				+0.6
3,770,515	-				+0.3
3,770,547	+				-0.2
3,770,548	-				-1.5
3,770,550	+				-0.6
3,770,550	+				+1.5
3,770,595	+				-1.3
3,770,621	+				-4.4
3,770,621	+				+1.8
3,770,621	+				-0.5
3,770,671	-				+0.7
3,770,671	-				+0.5
3,770,699	+				-4.2
3,770,700	-				+0.9
3,770,700	-				-3.9
3,770,952	-		PP_3331	0.24	-4.1
3,770,975	+		PP_3331	0.26	+0.0
3,771,080	+		PP_3331	0.33	-2.9
3,771,080	+		PP_3331	0.33	+0.8
3,771,081	-		PP_3331	0.33	-3.4
3,771,276	+		PP_3331	0.46	-3.3
3,771,326	+		PP_3331	0.49	-1.2
3,771,366	+		PP_3331	0.52	-1.1
3,771,623	-		PP_3331	0.69	+1.1
3,771,717	+		PP_3331	0.76	-2.4
3,771,717	+		PP_3331	0.76	-4.7
3,771,717	+		PP_3331	0.76	+1.1
3,771,740	+		PP_3331	0.77	-4.9
3,771,749	+		PP_3331	0.78	-5.1
3,771,752	+		PP_3331	0.78	-0.9
3,771,752	+		PP_3331	0.78	-5.0
3,771,753	-		PP_3331	0.78	+0.8
3,771,780	-		PP_3331	0.80	-1.0
3,771,780	-		PP_3331	0.80	-0.2
3,771,807	+		PP_3331	0.82	+1.6
3,771,808	-		PP_3331	0.82	+0.2
3,772,036	-				+0.7
3,772,036	-				+1.2
3,772,036	-				+1.0
3,772,036	-				+0.2
3,772,153	-				+1.4
3,772,223	+				-0.1
3,772,224	-				-3.7
3,772,285	+				-1.4
3,772,285	+				+0.8
3,772,349	+				+1.8
3,772,350	-				+0.4
3,772,350	-				+1.3
3,772,350	-				-4.6
3,772,350	-				-5.1
3,772,350	-				-0.0
3,772,646	+		PP_3332	0.89	+0.4
3,772,647	-		PP_3332	0.89	+0.6
3,772,647	-		PP_3332	0.89	+0.2
3,772,665	-				+1.1
3,772,665	-				+0.0
3,772,703	+				+0.7
3,772,724	+				+1.1
3,772,725	-				+0.1
3,772,725	-				+1.0
3,772,756	+				-1.3
3,772,757	-				-0.9
3,772,851	+		PP_3333	0.12	-2.1
3,772,852	-		PP_3333	0.12	-0.3
3,772,951	+		PP_3333	0.38	+0.6
3,772,952	-		PP_3333	0.38	-0.5