Strain Fitness in Pseudomonas putida KT2440 around PP_3239

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,673,792	+				+0.5
3,673,792	+				-0.5
3,673,811	+				+0.8
3,673,811	+				+0.2
3,673,811	+				+0.6
3,673,828	+				-3.0
3,673,841	+				+1.2
3,673,842	-				+1.3
3,673,842	-				+0.4
3,673,842	-				+0.9
3,673,924	-				+0.4
3,674,042	-		PP_3238	0.10	+0.1
3,674,185	+		PP_3238	0.35	-1.1
3,674,199	+				+2.3
3,674,218	+		PP_3238	0.41	-0.7
3,674,218	+		PP_3238	0.41	-4.3
3,674,218	+		PP_3238	0.41	+0.6
3,674,297	+		PP_3238	0.55	+1.0
3,674,297	+		PP_3238	0.55	+0.3
3,674,330	-				+1.7
3,674,351	-		PP_3238	0.64	-0.5
3,674,437	-		PP_3238	0.79	+1.2
3,674,456	+		PP_3238	0.83	-3.4
3,674,569	+				-0.1
3,674,576	+				-1.3
3,674,623	+				+0.7
3,674,623	+				-0.3
3,674,623	+				-0.9
3,674,875	+				+2.1
3,674,875	+				+1.3
3,674,875	+				+1.0
3,674,875	+				+1.5
3,674,875	+				-3.1
3,674,876	-				+2.3
3,674,876	-				+1.3
3,674,879	+				+0.9
3,675,418	+		PP_3239	0.64	+1.2
3,675,419	-		PP_3239	0.64	+1.1
3,675,462	-		PP_3239	0.68	+1.4
3,675,806	-				-4.7
3,675,970	-		PP_3240	0.85	-0.4
3,675,991	+				+1.2
3,675,992	-				-4.8
3,676,009	-				+0.7
3,676,113	-		PP_5592	0.11	-1.9
3,676,181	-		PP_5592	0.38	+0.9
3,676,248	+		PP_5592	0.65	+2.1
3,676,249	-		PP_5592	0.65	+1.2
3,676,249	-		PP_5592	0.65	+0.2
3,676,271	+		PP_5592	0.74	+0.3
3,676,272	-		PP_5592	0.74	+0.6
3,676,303	+		PP_5592	0.87	-4.1
3,676,307	+		PP_5592	0.88	-1.6
3,676,308	-		PP_5592	0.88	+0.1
3,676,308	-		PP_5592	0.88	+0.5
3,676,308	-		PP_5592	0.88	-1.3
3,676,308	-		PP_5592	0.88	-4.4
3,676,308	-		PP_5592	0.88	+0.3
3,676,330	+				+0.0
3,676,330	+				-0.9
3,676,330	+				-1.2
3,676,330	+				+0.5
3,676,330	+				+1.2
3,676,511	+		PP_3241	0.33	-4.6