Strain Fitness in Pseudomonas putida KT2440 around PP_3211

Experiment: PUT 8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PUT 8 MOI 1
3,643,093	+				+1.4
3,643,737	-		PP_3210	0.61	-3.6
3,643,985	-				-2.9
3,644,002	+				-1.3
3,644,003	-				-0.7
3,644,003	-				-1.4
3,644,005	+				+0.6
3,644,021	-				-0.5
3,644,021	-				+0.6
3,644,171	+		PP_3211	0.13	-5.1
3,644,171	+		PP_3211	0.13	-4.5
3,644,261	+		PP_3211	0.24	-5.0
3,644,803	-		PP_3211	0.88	-3.3
3,644,889	-				-0.8
3,644,905	+				+0.7
3,644,905	+				+1.2
3,644,938	+				-0.9
3,644,938	+				-1.6
3,644,939	-				+0.2
3,645,022	+				+0.4
3,645,023	-				-1.2
3,645,023	-				+1.8
3,645,023	-				-0.5
3,645,258	-		PP_3212	0.28	-3.4
3,645,287	+		PP_3212	0.31	+0.5
3,645,657	-		PP_3212	0.67	+1.7
3,645,657	-		PP_3212	0.67	+0.8
3,645,663	-		PP_3212	0.67	+0.6
3,645,680	+		PP_3212	0.69	+0.8
3,645,709	-		PP_3212	0.72	+0.0
3,645,758	+		PP_3212	0.77	+1.1
3,645,758	+		PP_3212	0.77	+0.6
3,645,786	+		PP_3212	0.79	+0.7
3,645,864	+		PP_3212	0.87	-0.4
3,645,864	+		PP_3212	0.87	+1.1